Scaffold Ga0134443

Basic Information
Taxon OID	3300014808 Open in IMG/M
Scaffold ID	Ga0134443_1000044 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from obese patients in Germany - AS66_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hohenheim
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014808 Open in IMG/M

Scaffold ID

Ga0134443_1000044 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from obese patients in Germany - AS66_3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hohenheim

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	150298
Total Scaffold Genes	192 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (30.73%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

150298

Total Scaffold Genes

192 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

59 (30.73%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location Name	Germany
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Germany

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F074964	Metagenome	119	N
F090484	Metagenome	108	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0134443_100004425	F090484	N/A	MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGLADAEACCAEVGTSVAGVCGMVSRRMKSYNNIAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNYNTTVGNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL*
Ga0134443_10000443	F074964	N/A	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKAADWCSDNVVYGGEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0134443_100004441	F099406	N/A	MSCNEYFLVTLESKSTPVRHKYTNLTDEWYDPDGVKYEDPDTIAKIEEQATDKNRIGDNTLYQKLIEIHSQGESIKSDIGDIGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLEPLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGMDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA*
Ga0134443_100004473	F098313	N/A	MKEKEFDFVIYPLKLIITVGLDYKTLCDRFENAELDHEGEWGDEGDLDSEVSFMNLVRDKRDDRAFKLLWNFQSENDMTIRNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEKDKDGKEN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0134443_1000044

Overview

Ecosystem & Geography

Associated Families

Sequences