3300014808: Human fecal microbial communities from obese patients in Germany - AS66_3

Overview

Basic Information

• IMG/M Taxon OID: 3300014808
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151615 | Ga0134443
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS66_3
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 152219093
• Sequencing Scaffolds: 10
• Novel Protein Genes: 13
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F066905	Metagenome	126	Y
F067844	Metagenome	125	N
F074964	Metagenome	119	N
F090484	Metagenome	108	N
F097172	Metagenome / Metatranscriptome	104	Y
F097493	Metagenome	104	Y
F098313	Metagenome	104	N
F099406	Metagenome	103	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134443_1000044	Not Available	150298
Ga0134443_1000072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	115923
Ga0134443_1000358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	35408
Ga0134443_1000824	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	16804
Ga0134443_1002605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5627
Ga0134443_1003457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	4387
Ga0134443_1003536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4313
Ga0134443_1008184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	2219
Ga0134443_1009276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	2011
Ga0134443_1037177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	695

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134443_1000044	Ga0134443_100004425	F090484	MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGLADAEACCAEVGTSVAGVCGMVSRRMKSYNNIAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNYNTTVGNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL*
Ga0134443_1000044	Ga0134443_10000443	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKAADWCSDNVVYGGEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0134443_1000044	Ga0134443_100004441	F099406	MSCNEYFLVTLESKSTPVRHKYTNLTDEWYDPDGVKYEDPDTIAKIEEQATDKNRIGDNTLYQKLIEIHSQGESIKSDIGDIGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLEPLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGMDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA*
Ga0134443_1000044	Ga0134443_100004473	F098313	MKEKEFDFVIYPLKLIITVGLDYKTLCDRFENAELDHEGEWGDEGDLDSEVSFMNLVRDKRDDRAFKLLWNFQSENDMTIRNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEKDKDGKEN*
Ga0134443_1000072	Ga0134443_10000722	F097172	MKKNVFKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHLEGCDKKGYVMDGFSKAAFYKDLNSLPAVKTGKTTINVPAVTSSVKSISKEKGNPIYESFVKFKAPKTGKYVFTIDNLQGTDDKSLKCMADGDLCQISKTGKKYGLDGVEDSDTVGKYDTLYENNYLARLRTILDNYKAEHPEYTDVIEETYEYQRDFVNTIPTTKIKFTTKLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK*
Ga0134443_1000358	Ga0134443_100035823	F066905	MPEESRNCGCGRNNNCLSNLFGGCGCGDSSILFFIIIFLLLFCNCGCNR*
Ga0134443_1000824	Ga0134443_10008248	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPXXXXFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0134443_1002605	Ga0134443_10026058	F097493	MKNGQAQFYERGVEIDGTVYGIHTDRDILRIKRSVVNNKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKTYNSMTELKQHVQSIMNGELTQDEINAMLMLQIAELKAGVGGE
Ga0134443_1003457	Ga0134443_10034571	F097172	MKKNVLKKLMCAVLAATCVATAVVPAMADDVVTAEAATKKVTSVYKYHLEGYDKKGYPVKFSKSSFYKDLNSLPAVKMGKTTINVPAVTASVKSVSKEKGNPRYQSFVKFKAPKTGKYVVTLNNLQGTDDKSLKSLYYDVFKPIKDGGKYTLELIDYDIVGDYTMLYENNYLARLRTILDNYKAEHPEYANVIEYDYNDYTDFVNKYPVDKIKFTTKLKKGQTYVYVIDNALGRTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYRK*
Ga0134443_1003536	Ga0134443_10035364	F042936	TKEGIMKTSGIVDRGEDTIRHFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0134443_1008184	Ga0134443_10081842	F097172	MLKKLMCAVLAAACVATAVVPAMADDVVTAEAATKSVTSVYKYHLEGYDKNGYPVSGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGKPEYVTYVKFKAPKTGKYVVTLDNLQGTDDKTLRCMMYCDFYQISRTGKKYCLTSIEDSDTVGKYDTLYENNYLARLRTILNNYKAEHPEYTDVIEETYIDYTDYVNKRPVNKIKFTTKLKKGRTYVFSVDNIGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK*
Ga0134443_1009276	Ga0134443_10092762	F097172	AVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYNKNGYPASYSKASFYKDLNSLPAVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKSVKEGKKYKLEYLYPDTVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYEYQKDFVNKYPVAKDKFTTKLKKGQTYVFVIDNSLGKTTCKPYFTTHGYNEQSCLYNTNYLKAYSFDMNIEYKK*
Ga0134443_1037177	Ga0134443_10371771	F067844	MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGAAVI