NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134390_113358

Scaffold Ga0134390_113358


Overview

Basic Information
Taxon OID3300014783 Open in IMG/M
Scaffold IDGa0134390_113358 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from obese patients in Germany - AS43_12
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hohenheim
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1207
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location NameGermany
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074899Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0134390_1133582F074899N/AMSGRKQWNKQAATSSFLDKKTPQSLIQQELEGSAVVGKDEVTSSNLVSSSNINRLNRKI*
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