3300014783: Human fecal microbial communities from obese patients in Germany - AS43_12

Overview

Basic Information

• IMG/M Taxon OID: 3300014783
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151562 | Ga0134390
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS43_12
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 131576614
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
Not Available	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F052660	Metagenome	142	N
F067845	Metagenome	125	N
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F084124	Metagenome	112	Y
F090513	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134390_100137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	89461
Ga0134390_101019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	17419
Ga0134390_101152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	15244
Ga0134390_103167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4882
Ga0134390_107104	Not Available	2128
Ga0134390_113358	All Organisms → cellular organisms → Bacteria	1207
Ga0134390_125155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	701

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134390_100137	Ga0134390_10013753	F084124	LNATAKVFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYRKIFMGAAQTRNF*
Ga0134390_101019	Ga0134390_1010192	F052660	MCILHVLPENTPEKIGQERAGTERTVVKSKIRLCIRNRSYGRFLYGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNA*
Ga0134390_101152	Ga0134390_1011521	F068855	VEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0134390_103167	Ga0134390_1031675	F026489	LVAKENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF*
Ga0134390_107104	Ga0134390_1071041	F090513	MAKYVRKIEWKLLHIKHILYMRPFGALKIVPQSVGNKNGTKAVLQGLAAAFVPYMLSFTYGNTA*
Ga0134390_113358	Ga0134390_1133582	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQELEGSAVVGKDEVTSSNLVSSSNINRLNRKI*
Ga0134390_125155	Ga0134390_1251551	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNDFLYWSGCYGVPDDVTVALLLDDSAAMTAQLYAPQADSAAAKLLEDAAGHSELGAAFIDYNGTAYVVAVFR*