Scaffold Ga0120686_1002385

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120686_1002385

Scaffold Ga0120686_1002385

Overview

Basic Information
Taxon OID	3300014763 Open in IMG/M
Scaffold ID	Ga0120686_1002385 Open in IMG/M
Source Dataset Name	Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Weill Cornell Medical College
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	718
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Canal → Unclassified → Unclassified → Aquatic Canal → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa

Source Dataset Sampling Location
Location Name	USA:New York City
Coordinates	Lat. (^o)	40.67	Long. (^o)	-73.99	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052541	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120686_10023852	F052541	AGGAG	MVKLILSNEKKITLKRGDKTITRSLLDYETNKAMYDFRGFKQVQDTVKEIKEVKVQDEKVVPL

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