3300014763: Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-11

Overview

Basic Information

• IMG/M Taxon OID: 3300014763
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118444 | Gp0134406 | Ga0120686
• Sample Name: Aquatic prokaryotic and eukaryotic communities from a canal in New York, USA: aquatic canal water -GCSS-11
• Sequencing Status: Permanent Draft
• Sequencing Center: Weill Cornell Medical College
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50858465
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa
• Type: Engineered
• Taxonomy: Engineered → Built Environment → Canal → Unclassified → Unclassified → Aquatic Canal → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA:New York City
• Coordinates
  • Lat. (^o): 40.67
  • Long. (^o): -73.99
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009460	Metagenome / Metatranscriptome	317	N
F009753	Metagenome / Metatranscriptome	313	Y
F052541	Metagenome / Metatranscriptome	142	Y
F065254	Metagenome	128	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120686_1001890	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	755
Ga0120686_1002385	Not Available	718
Ga0120686_1006021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	583
Ga0120686_1007777	Not Available	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120686_1001890	Ga0120686_10018902	F065254	CSEQAEKTSVARESLLWGCPITNFKATLPFNRMKQAFAAFKKRPRGPARLRP*
Ga0120686_1002385	Ga0120686_10023852	F052541	MVKLILSNEKKITLKRGDKTITRSLLDYETNKAMYDFRGFKQVQDTVKEIKEVKVQDEKVVPL
Ga0120686_1006021	Ga0120686_10060211	F009460	MAKWDLSKLENSASVGAHIDEDSSTPTQPTPLMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIMALCE
Ga0120686_1007777	Ga0120686_10077771	F009753	MLYAIYFALHFAMVFLGVVIAIHFDMTIGLLIATTFGVKFLFMLPNNR