Scaffold Ga0134311_100515

Overview

Basic Information

• Taxon OID: 3300014686
• Scaffold ID: Ga0134311_100515
• Source Dataset Name: Well water microbial communities from Bangladesh - BaraHaldiaGW0309
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3065
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium B3_Chlor (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Well Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates
  • Depth (m): 10 to 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013484	Metagenome / Metatranscriptome	271	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134311_1005152	F013484	GGGGG	VKVQLDFSDCTLSTEHQAVVSAVNQFLVWLPDDEDPEVALRLAMTILEAANVAPQDVLARAVGFSQSRSVRVYKQRLREEGLAGLFDHPIPGRPAVTTRTPVEKALFQVILSAVIEEHALPDDATLAERMNQVLREAQAPEAGQVTASMVETLRLRWDIQRVPLTRQLQAAPPPMPAEPERVRPGRTQVGGAFVLAVLLVEAGWLKFAHLLPMVPKYAVTATQWLLTAIFAVIFGVRRAFHLDDVCDPGFALVTGRPRPLSHGTFQHLLWAIPGSAAAQFYQATARQIIQSLGAGVRRLSLDGHNLARYTHLVDLVKGKIGNTGRILKAEELVLAYDLDAHLWLALRVYQGTKKLSQGIVPIVQEVLEHRGDLKGLLRLFFDKGGYHGQIFRALSECPDVHFYTPAVRYPDNVAQWEQLTDAQFDPEPFVFDKHADLPQAERPTYRLADTEMTLNVRQKQKVVGQVTLRAIVLHNPQGQKPAERWPVVFLTDDRQIDARALLNEYGDHWGQEFGHRIGRHDLYLDILPPGYVLRTYRDETGQLQREVEYDQTAFFLSAWLRCLVFNLMRRFAVELGGDYAKLWAGTLLRKFIRRPATLYLVGKELHVVFDPFPGQDALRPLLDKLNTKRTAIPWLNNLVVQFSIAQDEPLYPLAGPEKRNRLFGDG*