3300014686: Well water microbial communities from Bangladesh - BaraHaldiaGW0309

Overview

Basic Information

• IMG/M Taxon OID: 3300014686
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121290 | Gp0151483 | Ga0134311
• Sample Name: Well water microbial communities from Bangladesh - BaraHaldiaGW0309
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Tennessee
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27356794
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium B3_Chlor	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Well Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → well → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): 10 to 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013484	Metagenome / Metatranscriptome	271	Y
F053659	Metagenome / Metatranscriptome	141	Y
F060598	Metagenome / Metatranscriptome	132	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134311_100005	All Organisms → cellular organisms → Bacteria	80861
Ga0134311_100515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium B3_Chlor	3065
Ga0134311_100867	Not Available	2024
Ga0134311_107431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	602

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134311_100005	Ga0134311_10000526	F013484	VDFQFELAHRTLSTEQQAVLDAVNHLIAVLPDQPDSDVALRLGLMLLEVAKVAPQAELAAAAGFSQERSVRVYKERLKAQGLAGLFDRPIPGRPAVTTQTPVEKAFIQVVLAAVIEEHALPDDTTLAERVHQALRESQAADAGQVTASMIETLRLRWGIQRVPLQQALDTASTQATVPQTVQLGRTQVGGAFALAILLVEMGWLKLAKGLPIASGYAVTATHWLLTALFSVVFGIQRAFHLDAVCDLGFALVTGRARPLSHGTFQHILRGFPEQAVQQFYARSAKREVARLGEDPRRISIDGHNLPRYTQVVDLAKGKIGNTGRILKAEELVWAFDLDAHLWLAMRAYQGANKLSQALVEIVCEILKHRGPKPHPLRLFFDKGGSCGHVFRDLLQLSSVLFYTFAKRSEENVAAWERLPDRAFEPIPFTFDKHAGLPTDQRPAYRLADTEMTIHVWEDARVVETVTLRAMVLHDPQGQKPAERWPVTLLTNDRTRDARALLNEQGDHWGQEFAHRIGRHDLQSDILPPGYVLKTTRDAHGELQREVEFDNTAFFLSAWLHCLVFNLMTLFAQAMGGHYTKLWAGTLLRKFIRRPATLYLIGKELHVVFDPFPGQEDLQPLLDKLNAKRIGLPWLNNLIVQLSIAPDAAIYPLTEPEKRNRLFGDG*
Ga0134311_100515	Ga0134311_1005152	F013484	VKVQLDFSDCTLSTEHQAVVSAVNQFLVWLPDDEDPEVALRLAMTILEAANVAPQDVLARAVGFSQSRSVRVYKQRLREEGLAGLFDHPIPGRPAVTTRTPVEKALFQVILSAVIEEHALPDDATLAERMNQVLREAQAPEAGQVTASMVETLRLRWDIQRVPLTRQLQAAPPPMPAEPERVRPGRTQVGGAFVLAVLLVEAGWLKFAHLLPMVPKYAVTATQWLLTAIFAVIFGVRRAFHLDDVCDPGFALVTGRPRPLSHGTFQHLLWAIPGSAAAQFYQATARQIIQSLGAGVRRLSLDGHNLARYTHLVDLVKGKIGNTGRILKAEELVLAYDLDAHLWLALRVYQGTKKLSQGIVPIVQEVLEHRGDLKGLLRLFFDKGGYHGQIFRALSECPDVHFYTPAVRYPDNVAQWEQLTDAQFDPEPFVFDKHADLPQAERPTYRLADTEMTLNVRQKQKVVGQVTLRAIVLHNPQGQKPAERWPVVFLTDDRQIDARALLNEYGDHWGQEFGHRIGRHDLYLDILPPGYVLRTYRDETGQLQREVEYDQTAFFLSAWLRCLVFNLMRRFAVELGGDYAKLWAGTLLRKFIRRPATLYLVGKELHVVFDPFPGQDALRPLLDKLNTKRTAIPWLNNLVVQFSIAQDEPLYPLAGPEKRNRLFGDG*
Ga0134311_100867	Ga0134311_1008671	F060598	LLTAIFSVVFGIQRAFHLDEVCDLGFALATGRPRSLSHSTFQHILRAIPEQAAQTFYKRSAKGEVKRLEPGPRRISVDGHNLPRYTALVDLEKGKIGNTGRILKAEELVWAYDLDAHLWLAMRAFHGTNKLSQSLVEIVREVLKYRGPNQDQLRLFFDKGGSCGHVFRDLLPLPAVRFYTFAKRTEENVAEWEQLPAKAFEQKRFSFDKHADLPADQRPCYRLADTAMTLKVWDAAQHQIVDTVTLRAIVLHDAQAQKLAERWPVTLLTNDRTRDARVLLNEQGDHWGQEFAHRIGRHDLQSDILPTGYVLTTTRDEHGELQREVEFDNPAFFLSAWLHCLVFNLMTRFAQALGGESVHLWAGTLLRKFIRRPATLYLIEKELHVVFDPFPGQDELQPLLDKLNAKQVALPWLNHLVVQLSIAQDAPVYPLTEPEKRNRLFGDG*
Ga0134311_107431	Ga0134311_1074311	F053659	MIGYPSNLPKESAPMSITETSQNSKRQDRTIVLHLGNTLAEYRANLMKPDGIPTLIRRVEIADSLNWGCLSDGHHPGCLRQLHFTHHHTYTRMVKHFDGTWSSVSILRVRCLDCEAVFTILPSFRVRYKRHDTDAIEKFMTLLFITEDSYRMAGVSQALGMD