Scaffold Ga0181536_10058359

Overview

Basic Information

• Taxon OID: 3300014638
• Scaffold ID: Ga0181536_10058359
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2462
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002396	Metagenome / Metatranscriptome	564	Y
F003157	Metagenome / Metatranscriptome	504	Y
F066496	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181536_100583593	F003157	AGGAGG	MFDPDANQKRENTDMLGFARFGGLDRLDWLMILISVLLGTIAKQHHVLDLPDWFLEWVSPFLLMAFGYKARRKITEVVESRRDRGKDTREE*
Ga0181536_100583594	F002396	GAGG	MRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIVLLEILLGLFFIGCALAARARLRIQARSQVKEGPEGSTNAKAKWFDRYDVLMILIVIVIYSSVSKLLRGAGLSDGTVGILPLILFAAGILLKPRAVQFIERRRKDRTAKTHDGRSHVHADEKQEIARKETVERCQ*
Ga0181536_100583596	F066496	AGGAG	MSEKNQIVVVFIVALVLGAFVDRSTALKIVAGVVLLWTLQNQPVVFEYIRKLFSFVQRRP