NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134429_100123

Scaffold Ga0134429_100123


Overview

Basic Information
Taxon OID3300014544 Open in IMG/M
Scaffold IDGa0134429_100123 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from obese patients in Germany - AS65_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hohenheim
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58540
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (24.05%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location NameGermany
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089054Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0134429_10012340F089054N/AMLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPNQRINNNHLHSEHIRLQIRDILQIPLTDITIIDIISLP*
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