3300014544: Human fecal microbial communities from obese patients in Germany - AS65_24

Overview

Basic Information

• IMG/M Taxon OID: 3300014544
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151601 | Ga0134429
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS65_24
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 86351711
• Sequencing Scaffolds: 6
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F067844	Metagenome	125	N
F080163	Metagenome	115	N
F089054	Metagenome	109	N
F094005	Metagenome / Metatranscriptome	106	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134429_100077	Not Available	92448
Ga0134429_100123	Not Available	58540
Ga0134429_100236	Not Available	28613
Ga0134429_100308	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	21698
Ga0134429_100883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia	7136
Ga0134429_102229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3429

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134429_100077	Ga0134429_10007755	F044555	MKTTNPSSRITLSQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR*
Ga0134429_100077	Ga0134429_10007758	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESVNFRINQRNIKDFYEAMQNFENSLVDEFKEKKNNFCSANQFLESISDFDKIIFVIITYMKSYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESYVSDSEIELLQEKLNLIREEICKIMGIDPDLQKKGHEENYIFNLNIDSDNQIGFFLQATEL*
Ga0134429_100077	Ga0134429_10007760	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPWFKPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHTIKGIQWVEIPLSLVFDNRVFGYWFPPYKKYIPYRLRVLRLALKDLERIKEEYGKD*
Ga0134429_100077	Ga0134429_10007761	F032312	MARIKDYDEDLSAPKLLSERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAIVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS*
Ga0134429_100077	Ga0134429_10007762	F094005	LIFKNKIVYLYNKNKYIIYMKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDETTEKVITLDKKLKKLIEKLNE*
Ga0134429_100123	Ga0134429_10012340	F089054	MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPNQRINNNHLHSEHIRLQIRDILQIPLTDITIIDIISLP*
Ga0134429_100236	Ga0134429_10023641	F089054	MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPHQEINKNHLHSEFIRLRLREILQINLSDITIIDIIPLP*
Ga0134429_100308	Ga0134429_10030814	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESHAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0134429_100883	Ga0134429_1008831	F026592	QNRLRTASPQGIAALAAQGGVATLTERSDATFAGKQFSSADRE*
Ga0134429_102229	Ga0134429_1022291	F067844	MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGADVITPQHRSYRVPQ