Scaffold Ga0134397_106341

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134397_106341

Scaffold Ga0134397_106341

Overview

Basic Information
Taxon OID	3300014537 Open in IMG/M
Scaffold ID	Ga0134397_106341 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from obese patients in Germany - AS60_12
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hohenheim
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1705
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location Name	Germany
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F097493	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134397_1063416	F097493	N/A	YGIHTDRDIQRIKRRIVNDKFAETDDNFDMDTEIAKIQHTDVTFEQPTSEKLSQIQAKTYNSMSELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVDGE*

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