3300014537: Human fecal microbial communities from obese patients in Germany - AS60_12

Overview

Basic Information

• IMG/M Taxon OID: 3300014537
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151569 | Ga0134397
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS60_12
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 91731748
• Sequencing Scaffolds: 4
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F074964	Metagenome	119	N
F080163	Metagenome	115	N
F097493	Metagenome	104	Y
F099406	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134397_100107	Not Available	83937
Ga0134397_106077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1783
Ga0134397_106341	All Organisms → Viruses → Predicted Viral	1705
Ga0134397_110133	Not Available	1091

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134397_100107	Ga0134397_10010755	F064817	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDIVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0134397_100107	Ga0134397_10010766	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGSLPTVPDLEKPIEIQVSTTRRIPLEQNKEVQTKIKEIIYNNLHDTLIDELKGTISRFQAQYNIQEIKPYLQDILQNPEDLVSLSQHHKR*
Ga0134397_100107	Ga0134397_10010769	F080163	MKTIKFLQESFETKERFQQEISFKYSYNQDIVESVDFRINQRNIRYFYEAMQNFENSLVNEFKEKKTNFCSANQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSILIQSFYNYSHRDLSFSTKLESEVLDSENELLQEKLDLIREGICELIGIDPNLEKQGHEDNYVFNLNIESDNQIGFFLQATEL*
Ga0134397_100107	Ga0134397_10010770	F060985	MSNIDEKAKNNFIIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFKPERFGITHLWFPQGFSFIGYGEYHIIRGNRWLKTPLDKIDREDRIFGYWFPCYKKYIPHRIKVLKLALKDLERIKEEYGKEG*
Ga0134397_100107	Ga0134397_10010771	F032312	MAKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0134397_106077	Ga0134397_1060772	F074964	MIAKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKTADWCADNVVYGEEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0134397_106341	Ga0134397_1063416	F097493	YGIHTDRDIQRIKRRIVNDKFAETDDNFDMDTEIAKIQHTDVTFEQPTSEKLSQIQAKTYNSMSELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVDGE*
Ga0134397_110133	Ga0134397_1101331	F099406	LLSNMTWGDHVTKQYVDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEGGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANIDSAVGASEYDIEIQVGTFVVIQDKTYKAMNNMVTLSNTILSYLNFMAMPPKVVTTLAYLPKGAHNIIANVASATKLSMTVSSEDVGREWQGRGNNTTDTDITQPLPTSGRFQSMSGNSVVIPKISFIELSIWYINDKLVIRVGE*