NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134455_100022

Scaffold Ga0134455_100022


Overview

Basic Information
Taxon OID3300014534 Open in IMG/M
Scaffold IDGa0134455_100022 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from obese patients in Germany - AS63_6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hohenheim
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86041
Total Scaffold Genes112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (21.43%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location NameGermany
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032312Metagenome / Metatranscriptome180N
F044555Metagenome / Metatranscriptome154N
F060985Metagenome / Metatranscriptome132N
F064817Metagenome128N
F080163Metagenome115N
F094005Metagenome / Metatranscriptome106N
F101357Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0134455_100022100F064817N/AMNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQGAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLLVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPDYITGVFTDIWYKCQGYMDTDHVDLEEILELMHYNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEDDQRIGIQNIIERNINQENQDENETI*
Ga0134455_100022105F101357N/AMNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNLDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDIFKISLKDAYYTYSNTSHIHYEGGKFPSMLTIQLFNLEF*
Ga0134455_100022112F044555N/AMKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHKR*
Ga0134455_1000223F080163N/AMKTIKFLQESFETKERFQQEISIKYSYNLDIVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCSANQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESKVLDSEIELLQEKLNLIREEICELIGVDPNLEKQGHEDNYVFNLNIESGNQIGFFLQATEL*
Ga0134455_1000225F060985GGAMSNIDEEAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLEMRIFDNQNHEFWHSVIKPWFKPERFGITHLWFPERFSYIGYGEYHIIRGNRWMKTPIDKIDKEDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0134455_1000226F032312N/AMARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIIFIYALHDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS*
Ga0134455_1000227F094005N/ALIFKNKIVYLYNKNKYIIYMKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDKTLEKVITLDKKLKKLIEKLNE*

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