Scaffold Ga0134455_100022

Overview

Basic Information

• Taxon OID: 3300014534
• Scaffold ID: Ga0134455_100022
• Source Dataset Name: Human fecal microbial communities from obese patients in Germany - AS63_6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hohenheim
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 86041
• Total Scaffold Genes: 112
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (21.43%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location

• Location Name: Germany
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134455_100022100	F064817	N/A	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQGAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLLVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPDYITGVFTDIWYKCQGYMDTDHVDLEEILELMHYNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEDDQRIGIQNIIERNINQENQDENETI*
Ga0134455_100022105	F101357	N/A	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNLDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDIFKISLKDAYYTYSNTSHIHYEGGKFPSMLTIQLFNLEF*
Ga0134455_100022112	F044555	N/A	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHKR*
Ga0134455_1000223	F080163	N/A	MKTIKFLQESFETKERFQQEISIKYSYNLDIVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCSANQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESKVLDSEIELLQEKLNLIREEICELIGVDPNLEKQGHEDNYVFNLNIESGNQIGFFLQATEL*
Ga0134455_1000225	F060985	GGA	MSNIDEEAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLEMRIFDNQNHEFWHSVIKPWFKPERFGITHLWFPERFSYIGYGEYHIIRGNRWMKTPIDKIDKEDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0134455_1000226	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIIFIYALHDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS*
Ga0134455_1000227	F094005	N/A	LIFKNKIVYLYNKNKYIIYMKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDKTLEKVITLDKKLKKLIEKLNE*