3300014534: Human fecal microbial communities from obese patients in Germany - AS63_6

Overview

Basic Information

• IMG/M Taxon OID: 3300014534
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151627 | Ga0134455
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS63_6
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 69602366
• Sequencing Scaffolds: 6
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F042936	Metagenome	157	N
F044555	Metagenome / Metatranscriptome	154	N
F052660	Metagenome	142	N
F055775	Metagenome	138	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F092228	Metagenome	107	N
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134455_100022	Not Available	86041
Ga0134455_100097	Not Available	45091
Ga0134455_100488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	16151
Ga0134455_101266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	6914
Ga0134455_103969	Not Available	2282
Ga0134455_103974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2279

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134455_100022	Ga0134455_100022100	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQGAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLLVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPDYITGVFTDIWYKCQGYMDTDHVDLEEILELMHYNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEDDQRIGIQNIIERNINQENQDENETI*
Ga0134455_100022	Ga0134455_100022105	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNLDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDIFKISLKDAYYTYSNTSHIHYEGGKFPSMLTIQLFNLEF*
Ga0134455_100022	Ga0134455_100022112	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHKR*
Ga0134455_100022	Ga0134455_1000223	F080163	MKTIKFLQESFETKERFQQEISIKYSYNLDIVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCSANQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYSHRDLSFSTKLESKVLDSEIELLQEKLNLIREEICELIGVDPNLEKQGHEDNYVFNLNIESGNQIGFFLQATEL*
Ga0134455_100022	Ga0134455_1000225	F060985	MSNIDEEAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLEMRIFDNQNHEFWHSVIKPWFKPERFGITHLWFPERFSYIGYGEYHIIRGNRWMKTPIDKIDKEDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0134455_100022	Ga0134455_1000226	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIIFIYALHDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS*
Ga0134455_100022	Ga0134455_1000227	F094005	LIFKNKIVYLYNKNKYIIYMKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDKTLEKVITLDKKLKKLIEKLNE*
Ga0134455_100097	Ga0134455_10009746	F055775	MAQIAQQDNLVIEVTTTAAALDDATKKKLIECIEGGTITDVILVTKEVEKEISHARVVSWLVDTTGDSPKYTIHIINANSGAVAAIALN*
Ga0134455_100488	Ga0134455_1004882	F092228	MKKKCTFVLISVLTVACIVFAYLLFFYNPSFNMVFDSDTDSYFNNSYLSYNDGMLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVISKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPAKIADKCDCDELLATKNFLYCYTINYILPRGVANLWVKGYLIDQLAIS*
Ga0134455_101266	Ga0134455_1012663	F042936	MGRGGGKGRVWKTKEGIMKTSEIVDRGEDTIRHFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0134455_103969	Ga0134455_1039691	F055775	MAQIAQQDNLVIEVTTTAAALDDDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIH
Ga0134455_103974	Ga0134455_1039741	F052660	MCILRVLPEKTSERIGQERAGIEWTVVKSKIRLCIRNRSYGRFFYGGILMGIALPIPSHRAKSHDFAYWWPAATGHSRSAD