Scaffold Ga0134303_100020

Overview

Basic Information

• Taxon OID: 3300014508
• Scaffold ID: Ga0134303_100020
• Source Dataset Name: Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0164 : 64 days incubation
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Battelle Memorial Institute, Gulf Coast Restoration Organization
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23874
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (15.15%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities To Study Oil Droplet Degradation From Trondheimsfjord, Norway

Source Dataset Sampling Location

• Location Name: Norway: Trondheimsfjord
• Coordinates
  • Lat. (^o): 63.43
  • Long. (^o): 10.43
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047173	Metagenome	150	Y
F103048	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134303_10002051	F103048	N/A	MTLKENEQNEIIFVDKFGENSIHIIHCSETIEEIKEDVATPYIVAEEATNFARVHLVTDFSEDEALQQVDEYLREKEGLEETHLIAVFEAKI*
Ga0134303_10002066	F047173	N/A	MRTIETKVYTIDEHPNPSAVYEWIRDNWHDLNQHSVDEMIDSIKALSNKIGGSFDYSISAVPDRGEFIRFKDYDQEALAELNAGECPLTGVCWDADLIEALQKGDPSKALESIHYNTEHIYSDKGLEELCESNEYEFTEEGNVF*