3300014508: Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0164 : 64 days incubation

Overview

Basic Information

• IMG/M Taxon OID: 3300014508
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121288 | Gp0151326 | Ga0134303
• Sample Name: Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0164 : 64 days incubation
• Sequencing Status: Permanent Draft
• Sequencing Center: Battelle Memorial Institute, Gulf Coast Restoration Organization
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 35532472
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Seonamhaeicola → Seonamhaeicola aphaedonensis	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Eurybiavirus → unclassified Eurybiavirus → Eurybiavirus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities To Study Oil Droplet Degradation From Trondheimsfjord, Norway
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities To Study Oil Droplet Degradation From Trondheimsfjord, Norway

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Norway: Trondheimsfjord
• Coordinates
  • Lat. (^o): 63.43
  • Long. (^o): 10.43
  • Alt. (m): N/A
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F006242	Metagenome / Metatranscriptome	378	Y
F010172	Metagenome / Metatranscriptome	307	Y
F036781	Metagenome / Metatranscriptome	169	Y
F037124	Metagenome / Metatranscriptome	168	N
F047173	Metagenome	150	Y
F092706	Metagenome / Metatranscriptome	107	Y
F103048	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134303_100008	Not Available	36670
Ga0134303_100020	Not Available	23874
Ga0134303_100732	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Seonamhaeicola → Seonamhaeicola aphaedonensis	3464
Ga0134303_105410	Not Available	1161
Ga0134303_106738	All Organisms → Viruses → Predicted Viral	1017
Ga0134303_113538	Not Available	650
Ga0134303_118273	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Eurybiavirus → unclassified Eurybiavirus → Eurybiavirus sp.	536

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134303_100008	Ga0134303_1000083	F010172	MKTLLVTLAALTLVSCTQLNSLEITPDDNAMACLRGNTNAAGAVLGANVSGITVELPAQVDTSGWTADDWKTLAELCD*
Ga0134303_100020	Ga0134303_10002051	F103048	MTLKENEQNEIIFVDKFGENSIHIIHCSETIEEIKEDVATPYIVAEEATNFARVHLVTDFSEDEALQQVDEYLREKEGLEETHLIAVFEAKI*
Ga0134303_100020	Ga0134303_10002066	F047173	MRTIETKVYTIDEHPNPSAVYEWIRDNWHDLNQHSVDEMIDSIKALSNKIGGSFDYSISAVPDRGEFIRFKDYDQEALAELNAGECPLTGVCWDADLIEALQKGDPSKALESIHYNTEHIYSDKGLEELCESNEYEFTEEGNVF*
Ga0134303_100732	Ga0134303_1007326	F001728	MNDFELRKTEEKDYYRLFINGVDVTGKQEKSTFRHLIQTIDNVL*
Ga0134303_105410	Ga0134303_1054102	F036781	TIDFTPVVFWIVTAVIAVIAYEPKAVIVLISAWMPAPPDESDPAITNILDFGFNLFNFS*
Ga0134303_106738	Ga0134303_1067382	F037124	VIEIIAAVSAAGKAFNYIQQAVNKGHEINDLAHKFGAFFDAKDKIGEVEASVDNASAMSKLFAKGSVESAALQITMAKQKTLQMERQLREIITYTVGQEVYVEMLRTRATIRKQRLDAARAKAARKRLIIDGIGFAFIGTILFACVMAVVGVVI*
Ga0134303_113538	Ga0134303_1135382	F092706	MSKEGLRFDWHPILQADFINDLAAEVMSTVEAARTSTRGSSKDAIDVRTQQQLIIAKHLLSALYCAHSTISSKKTLTRISVIKKTDGYSGDKTKYPTRIHYSFRHFSEVYKALEQLNWISIEKGEQGAGYTRIHAKNR
Ga0134303_118273	Ga0134303_1182732	F006242	RLKTEPDAEWHFHELSSDKFPGGFARESDWAVRYKRRNDSPKHKHEYKVELRT*