NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134509_10002

Scaffold Ga0134509_10002


Overview

Basic Information
Taxon OID3300014504 Open in IMG/M
Scaffold IDGa0134509_10002 Open in IMG/M
Source Dataset NameDeep-sea hydrothermal vent sediment bacterial and viral communities from Southwest Indian Ocean - SWIR-S021-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterZhejiang University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19434
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (56.52%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep-Sea Hydrothermal Vent Sediment → Deep-Sea Hydrothermal Vent Sediment Bacterial And Viral Communities From Southwest Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)-37.88Long. (o)49.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033389Metagenome / Metatranscriptome177Y
F091297Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0134509_1000212F091297AGGGGGMELRKINSKKGIQLSQAFGAVLTLVLVAVLVIIAIFLFVTLSDSFTADSAEANASDAMVTEFSNYTSLIGLVGTIIFLGLVIGVLVTSFAFGGRRV*
Ga0134509_1000217F033389N/AMVAKSARTKRTAMMRAAEERKKGLSASIFKKKKGYGVSVTRKK*

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