3300014504: Deep-sea hydrothermal vent sediment bacterial and viral communities from Southwest Indian Ocean - SWIR-S021-M

Overview

Basic Information

• IMG/M Taxon OID: 3300014504
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121300 | Gp0151681 | Ga0134509
• Sample Name: Deep-sea hydrothermal vent sediment bacterial and viral communities from Southwest Indian Ocean - SWIR-S021-M
• Sequencing Status: Permanent Draft
• Sequencing Center: Zhejiang University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3907367
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Collierbacteria → Candidatus Collierbacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep-Sea Hydrothermal Vent Sediment Bacterial And Viral Communities From Southwest Indian Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep-Sea Hydrothermal Vent Sediment → Deep-Sea Hydrothermal Vent Sediment Bacterial And Viral Communities From Southwest Indian Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → deep marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Indian Ocean
• Coordinates
  • Lat. (^o): -37.88
  • Long. (^o): 49.66
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033389	Metagenome / Metatranscriptome	177	Y
F091297	Metagenome	107	Y
F091388	Metagenome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134509_10002	Not Available	19434
Ga0134509_10015	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Collierbacteria → Candidatus Collierbacteria bacterium	7617

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134509_10002	Ga0134509_1000212	F091297	MELRKINSKKGIQLSQAFGAVLTLVLVAVLVIIAIFLFVTLSDSFTADSAEANASDAMVTEFSNYTSLIGLVGTIIFLGLVIGVLVTSFAFGGRRV*
Ga0134509_10002	Ga0134509_1000217	F033389	MVAKSARTKRTAMMRAAEERKKGLSASIFKKKKGYGVSVTRKK*
Ga0134509_10015	Ga0134509_100154	F091388	MENRNEMRLKQKAKFYYNERLECHIVKEPKGFINGFFKSDLIDGLYYLFEDQRFPDEQKKLFLWDIFDISDYEVEVK*