Basic Information | |
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Taxon OID | 3300014501 Open in IMG/M |
Scaffold ID | Ga0182024_10001461 Open in IMG/M |
Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 60919 |
Total Scaffold Genes | 61 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (47.54%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Stordalen | |||||||
Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F066279 | Metagenome / Metatranscriptome | 127 | Y |
F091949 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0182024_1000146138 | F091949 | AGGAG | LPVDLDVIRSRFIQDNLRRALQEPDKERAARTLRAFRNYFQWFENRLPDLERLAIVGQLASLEAAYPRECPEKDPSKVSAR* |
Ga0182024_1000146158 | F066279 | N/A | MARFQFTLEKVLRWRGVELTAEEAKLKALVQEQLHLQTLLADVSAERSKLISSLGSMPDLRGDDLRTLTACGLRLRRTAETLAQRLLQCGRELAKQRRKYSEAKRRVRLLEELKDRRLQEWKYEEAALLEELASESFLANWNRERI* |
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