Metagenome / Metatranscriptome Family F091949

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091949
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	78 residues
Representative Sequence	MDVDAIRSRFIQDNLRRALMEQDRARAARALRAFRNYFQWFENRLPDLEKLTIIGQLAKLEEAYARGTSEERFSEPSPASGR
Number of Associated Samples	76
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.83 %
% of genes near scaffold ends (potentially truncated)	39.25 %
% of genes from short scaffolds (< 2000 bps)	79.44 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.551 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.364 % of family members)
Environment Ontology (ENVO)	Unclassified (37.383 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (79.439 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.09% β-sheet: 0.00% Coil/Unstructured: 40.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01343	Peptidase_S49	44.86
PF02441	Flavoprotein	9.35
PF04012	PspA_IM30	2.80
PF13193	AMP-binding_C	1.87
PF00501	AMP-binding	0.93
PF01597	GCV_H	0.93
PF09586	YfhO	0.93
PF16177	ACAS_N	0.93
PF07238	PilZ	0.93
PF01734	Patatin	0.93
PF15975	Flot	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	89.72
COG1842	Phage shock protein A	Transcription [K]	5.61
COG0509	Glycine cleavage system protein H (lipoate-binding)	Amino acid transport and metabolism [E]	0.93
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.93
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.93
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.55 %
Unclassified	root	N/A	36.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.55 %
Unclassified	root	N/A	36.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.55 %
Unclassified	root	N/A	36.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	12.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	9.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	8.41 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	6.54 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	4.67 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1.87 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	4.67 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1.87 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	4.67 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1.87 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10083456	All Organisms → cellular organisms → Bacteria	2331	Open in IMG/M
3300001593\|JGI12635J15846_10629878	Not Available	622	Open in IMG/M
3300002245\|JGIcombinedJ26739_100982009	Not Available	729	Open in IMG/M
3300004080\|Ga0062385_10497014	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300004082\|Ga0062384_100256653	Not Available	1063	Open in IMG/M
3300004091\|Ga0062387_100883948	Not Available	674	Open in IMG/M
3300004091\|Ga0062387_101213931	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300004092\|Ga0062389_102231229	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300004092\|Ga0062389_103240452	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300004121\|Ga0058882_1349484	Not Available	513	Open in IMG/M
3300004152\|Ga0062386_100706786	Not Available	827	Open in IMG/M
3300004635\|Ga0062388_101419331	Not Available	698	Open in IMG/M
3300005529\|Ga0070741_10016814	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12117	Open in IMG/M
3300005591\|Ga0070761_10063164	All Organisms → cellular organisms → Bacteria	2094	Open in IMG/M
3300005591\|Ga0070761_11082662	Not Available	510	Open in IMG/M
3300005602\|Ga0070762_10111425	All Organisms → cellular organisms → Bacteria	1597	Open in IMG/M
3300005602\|Ga0070762_10534480	Not Available	772	Open in IMG/M
3300005602\|Ga0070762_11007283	Not Available	571	Open in IMG/M
3300005610\|Ga0070763_10695764	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300005712\|Ga0070764_10043001	All Organisms → cellular organisms → Bacteria	2302	Open in IMG/M
3300005712\|Ga0070764_10178290	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300005921\|Ga0070766_10893440	Not Available	608	Open in IMG/M
3300005921\|Ga0070766_10997479	Not Available	576	Open in IMG/M
3300006638\|Ga0075522_10191996	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300010379\|Ga0136449_100489577	All Organisms → cellular organisms → Bacteria	2140	Open in IMG/M
3300010379\|Ga0136449_101691025	Not Available	954	Open in IMG/M
3300011120\|Ga0150983_10363077	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300011120\|Ga0150983_11855481	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300011120\|Ga0150983_14514619	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300014169\|Ga0181531_10178504	All Organisms → cellular organisms → Bacteria	1287	Open in IMG/M
3300014501\|Ga0182024_10001461	All Organisms → cellular organisms → Bacteria → Acidobacteria	60919	Open in IMG/M
3300014501\|Ga0182024_10041236	All Organisms → cellular organisms → Bacteria	7582	Open in IMG/M
3300014654\|Ga0181525_10223462	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300014654\|Ga0181525_10533110	Not Available	651	Open in IMG/M
3300014657\|Ga0181522_10361113	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300017925\|Ga0187856_1000387	All Organisms → cellular organisms → Bacteria → Acidobacteria	40828	Open in IMG/M
3300017970\|Ga0187783_10564935	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300017975\|Ga0187782_10836523	Not Available	712	Open in IMG/M
3300018006\|Ga0187804_10552014	Not Available	521	Open in IMG/M
3300018012\|Ga0187810_10012679	All Organisms → cellular organisms → Bacteria	2962	Open in IMG/M
3300019179\|Ga0184593_130771	Not Available	589	Open in IMG/M
3300020583\|Ga0210401_10247853	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300020583\|Ga0210401_10313849	All Organisms → cellular organisms → Bacteria	1429	Open in IMG/M
3300021171\|Ga0210405_10819371	Not Available	712	Open in IMG/M
3300021181\|Ga0210388_10112862	All Organisms → cellular organisms → Bacteria	2336	Open in IMG/M
3300021181\|Ga0210388_10693069	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300021181\|Ga0210388_10741892	Not Available	854	Open in IMG/M
3300021181\|Ga0210388_10807364	Not Available	813	Open in IMG/M
3300021181\|Ga0210388_11068028	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300021181\|Ga0210388_11449772	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300021402\|Ga0210385_10731546	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300021402\|Ga0210385_10876915	Not Available	689	Open in IMG/M
3300021404\|Ga0210389_10440322	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300021405\|Ga0210387_10091626	All Organisms → cellular organisms → Bacteria	2527	Open in IMG/M
3300021406\|Ga0210386_10125379	All Organisms → cellular organisms → Bacteria	2128	Open in IMG/M
3300021407\|Ga0210383_10070384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2922	Open in IMG/M
3300021420\|Ga0210394_10003855	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	18145	Open in IMG/M
3300022512\|Ga0242676_1035867	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	576	Open in IMG/M
3300022529\|Ga0242668_1061124	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300022530\|Ga0242658_1112621	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300022714\|Ga0242671_1120913	Not Available	517	Open in IMG/M
3300022714\|Ga0242671_1125984	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	509	Open in IMG/M
3300022715\|Ga0242678_1071045	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	539	Open in IMG/M
3300022715\|Ga0242678_1078593	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300022716\|Ga0242673_1136892	Not Available	504	Open in IMG/M
3300022722\|Ga0242657_1188188	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300025625\|Ga0208219_1079295	Not Available	767	Open in IMG/M
3300025627\|Ga0208220_1193129	Not Available	500	Open in IMG/M
3300025862\|Ga0209483_1135486	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300027575\|Ga0209525_1026699	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300027609\|Ga0209221_1050278	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300027768\|Ga0209772_10269053	Not Available	540	Open in IMG/M
3300027853\|Ga0209274_10710154	Not Available	518	Open in IMG/M
3300027879\|Ga0209169_10010299	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	5234	Open in IMG/M
3300027884\|Ga0209275_10832750	Not Available	532	Open in IMG/M
3300027895\|Ga0209624_10014653	All Organisms → cellular organisms → Bacteria	5008	Open in IMG/M
3300027895\|Ga0209624_10074398	All Organisms → cellular organisms → Bacteria	2195	Open in IMG/M
3300027908\|Ga0209006_10206123	All Organisms → cellular organisms → Bacteria	1706	Open in IMG/M
3300027908\|Ga0209006_10368428	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300027908\|Ga0209006_11163862	Not Available	605	Open in IMG/M
3300028780\|Ga0302225_10030811	All Organisms → cellular organisms → Bacteria	2693	Open in IMG/M
3300028780\|Ga0302225_10296237	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	768	Open in IMG/M
3300028789\|Ga0302232_10453025	Not Available	631	Open in IMG/M
3300028906\|Ga0308309_10593766	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300029910\|Ga0311369_11339573	Not Available	545	Open in IMG/M
3300029943\|Ga0311340_10245555	All Organisms → cellular organisms → Bacteria	1752	Open in IMG/M
3300029951\|Ga0311371_10548497	Not Available	1506	Open in IMG/M
3300030007\|Ga0311338_11160382	Not Available	736	Open in IMG/M
3300030058\|Ga0302179_10087246	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300030580\|Ga0311355_11736660	Not Available	531	Open in IMG/M
3300030730\|Ga0307482_1272516	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	537	Open in IMG/M
3300031057\|Ga0170834_103599058	Not Available	948	Open in IMG/M
3300031234\|Ga0302325_10614928	All Organisms → cellular organisms → Bacteria	1595	Open in IMG/M
3300031234\|Ga0302325_12828862	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300031708\|Ga0310686_115067934	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300031754\|Ga0307475_11169952	Not Available	600	Open in IMG/M
3300031817\|Ga0316046_113082	Not Available	509	Open in IMG/M
3300031866\|Ga0316049_122063	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300032160\|Ga0311301_11084591	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300032515\|Ga0348332_11311411	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300032515\|Ga0348332_14352071	Not Available	518	Open in IMG/M
3300032805\|Ga0335078_10225935	All Organisms → cellular organisms → Bacteria → Acidobacteria	2576	Open in IMG/M
3300032805\|Ga0335078_10739675	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300032895\|Ga0335074_10028542	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	7840	Open in IMG/M
3300032895\|Ga0335074_10197866	All Organisms → cellular organisms → Bacteria	2456	Open in IMG/M
3300032895\|Ga0335074_10915135	Not Available	792	Open in IMG/M
3300033134\|Ga0335073_10055262	All Organisms → cellular organisms → Bacteria	5284	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.05%
Aquatic	Environmental → Aquatic	14.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.90%
Freshwater	Environmental → Aquatic → Freshwater	14.95%
Peat	Environmental → Terrestrial → Peat	10.28%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.38%
Loam	Environmental → Terrestrial → Soil → Loam	26.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.28%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.35%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	26.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	13.08%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.28%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.48%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.74%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.08%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	13.08%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.28%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	8.41%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.74%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.74%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.87%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.87%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004121	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300019179	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZI2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025627	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031817	Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031866	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_100834562	3300001593	Forest Soil	MLTKETECCLMDVDVIRSRFIQDNLRRALQEPDKERAARTLRAFRNYFQWFESRLPDFERLAIVGQLASLEAAHPVDNLENDPPEVSAR*
JGI12635J15846_106298782	3300001593	Forest Soil	MDVDAIRSRFILENLRRALQEPDKERAARALRAFRNYFQWFEKQLPDFEKLTILAQLAKLEQIYPEKGHFPH*
JGIcombinedJ26739_1009820092	3300002245	Forest Soil	MDVDAIRSRFIQDNLRRALMDQDRTRAARALRAFRNYFQWFENRVPDLEKLTIMGQLAKLEEAYARGTSEERFSEPSPASGR*
Ga0062385_104970142	3300004080	Bog Forest Soil	GVLQVDVDAIRSRFIQDNLRRALLEQDRARAVRTLRAFRNYFQWFENRLPDLEKIAIIGQLTRLEEAYARESCENRSSEPGQTSAR*
Ga0062384_1002566532	3300004082	Bog Forest Soil	VDVDAIRSRFIQDNLRRALLEQDRARAVRTLRAFRNYFQWFENRLPDLEKIAIIGQLTRLEEAYARESCENRSSEPGQTSAR*
Ga0062387_1008839481	3300004091	Bog Forest Soil	MDVDAIRSRFIQDNLRRALFDQDKARAARTLRAFRNYFQWFENQLPDPEKLAIMRQLARLEARDSPNEAHSGPCPVTGR*
Ga0062387_1012139312	3300004091	Bog Forest Soil	FLASKVPRDWRSSSTVDIDAIRSRFIQENLRRALEERDRERAVRTLRAFRNYYQWFESRLPDPEKVTIADQLEQLDDAYAGETSDEGPTRASAR*
Ga0062389_1022312292	3300004092	Bog Forest Soil	KPHYLHRIFLASKVPRDWRSSSTVDIDAIRSRFIQENLRRALEERDRERAVRTLRAFRNYYQWFESRLPDPEKVTIADQLEQLDDAYAGETSDEGPTRASAR*
Ga0062389_1032404521	3300004092	Bog Forest Soil	QDNLRRALFEQDRERAVRALRAFRNYFQWFENRFPELEKLAIMGQLASLEDAYAGQISEDRACVRSHLSGR*
Ga0058882_13494842	3300004121	Forest Soil	DVDAIRSRFIQENLRRALMEQDKARAARTLHAFRNYFQWFETRLPDFEKLTILRQLARLEEAYSAESSNEPYQPSAR*
Ga0062386_1007067862	3300004152	Bog Forest Soil	VDVDAIRSRFIQDNLRRALQEQDRERASRTLRAFRAYFQWFEGRLPDPEKMTIVSQLAKLEETYSGESSEVGPSQVSARQ*
Ga0062388_1014193312	3300004635	Bog Forest Soil	MDVDAIRSRFIQDNLRRALFDQDKARAARTLRAFRNYFQWFENQLPDPEKLAIMRQLARLEAR
Ga0070741_1001681411	3300005529	Surface Soil	MDVDVIRSRFIQENLRYALFARDRERAIRTLRAFRLYFQWYENRIPSLDKLSILSQLTRLEEAYVQQAANDGAVRRSETSMDDDRVGHHF*
Ga0070761_100631642	3300005591	Soil	VDVDAIRSRFIQENLRRALEQRDRERAVRTLRAFRNYYQWFESRFPDHEKVTIAGQLEQLDDAYAGETSDEGTPQASAR*
Ga0070761_110826622	3300005591	Soil	MLRKIAGRTMDVDAIRSRFIQDNLRRALMEHDRARAVRALRAFRNYFQWFENRVPDLEKLTIMGQLARLEEAYARDSSEERSSEPSLAS
Ga0070762_101114252	3300005602	Soil	MDVDAIRSRFIQDNLRRALMEHDRARAVRAMRAFRNYFQWFENRVPDLEKLTIMGQLAKLEEAYARGTSEERFSEPSPASGR*
Ga0070762_105344802	3300005602	Soil	MLIETVEVLLMDVDAIRSRFIQENLRRALQEPDKERAARAFRAFHNYFQWFEDRLPDFEKMAIRSQLARLERFEREASR*
Ga0070762_110072832	3300005602	Soil	MDVDTIRSRFIQENLRNALMARDRERAARTLRAFRLYFQWFENRVPDMEKISIVSQLARLEEAYTGRSSDDAAPSPSAR*
Ga0070763_106957642	3300005610	Soil	DIDAIRSRFIQENLQRALEQRDRERAVRTLRAFRNYYQWFESRFPDREKLTIAGQLEQLDDAYAGETSDEGTPQASAR*
Ga0070764_100430016	3300005712	Soil	VDIDAIRSRFIQENLRRALEERDRERAVRTLRAFRNYYQWFESRLPDPEKVTIADQLEQLDDAYAGETSDEGPTRASAR*
Ga0070764_101782902	3300005712	Soil	MDVDAIRSRFIQDNLRRALLEQDKARAARALRAFRSYFQWFEHRLPDLEKLAIMSQLSKLEEAYTRQSTEDRRSEPCHASAR*
Ga0070766_108934402	3300005921	Soil	VERFDMDVAAIRSRFIQENLRRALQEPDKERAARAFRAFRNYFQWFEKQLPDFEKPTIVAQLAQLEQIYAAGSPELGHFPH*
Ga0070766_109974792	3300005921	Soil	MDIDAIRSRFIQENLQRALEQRDRERAVRTLRAFRNYYQWFESRFPDREKLTIAGQLEQLDDAYAGETSDEGTPQASAR*
Ga0075522_101919962	3300006638	Arctic Peat Soil	VLPVDVDVIRSRFIQDNLRRALQEPDKERAARTLRAFRKYFQWFENRLPDLERLTIVDQLARLEAAHARENLEKDPSPLTAR*
Ga0136449_1004895773	3300010379	Peatlands Soil	MDVDAIRSRFIQDNLRRALLERDREQSARAARAMRNYFQWFEDRFPEAEKLAITSQLASLEEACASPR*
Ga0136449_1016910252	3300010379	Peatlands Soil	MDVDIIRSRFIQDNLRRALMEPDKERAVRALRAFRNYFQWFEHRFPDLEKSTIVGQLASLEEAYARQIPRSGSSGR*
Ga0150983_103630771	3300011120	Forest Soil	QMDVDAIRSRFIQENLRRALMEQDKARAARTLHAFRNYFQWFETRLPDFEKLTILRQLARLEEAYSAESSNEPYQPSAR*
Ga0150983_118554812	3300011120	Forest Soil	MDVDAIRSRFIQENLQRALEQRDRERAVRTLRAFRNYYQWFESRFPDREKLTIAGQLEQLDDAYAGETSDEGTPQASAR*
Ga0150983_145146191	3300011120	Forest Soil	HLMDVDAIRSRFIQDNLRRALMDQDRTRAARALRAFRNYFQWFENRVPDLEKLTIMGQLAKLEEAYARGTSEERFSEPSPASGR*
Ga0181531_101785042	3300014169	Bog	MDVDAIRSRFIQENLRRALQEPDKERSVRALRAFRNYFHWFENQLPDFEKLTIAAQLAKLERLYAPESSEKGHFQR*
Ga0182024_1000146138	3300014501	Permafrost	LPVDLDVIRSRFIQDNLRRALQEPDKERAARTLRAFRNYFQWFENRLPDLERLAIVGQLASLEAAYPRECPEKDPSKVSAR*
Ga0182024_100412363	3300014501	Permafrost	MDVDIIRIRFIQDNLRRALMEPDKERAVRALRAFRNYYQWFEHRFPDREKSVIAGQLASLEEAYASQIPSSGSNGR*
Ga0181525_102234621	3300014654	Bog	VDVDAIRSRFIQDNLRCALEQRDRERAVRTLRAFRNYFQWFESRLPDPEKVTIADQLEQLDDAYGAETSDEGTPRASAR*
Ga0181525_105331102	3300014654	Bog	MDVDAIRSRFIQDNLRRALQERDRERAVRTMRAFRNYFQWFENRLPDLEKLTIVNQLARLEESYADG
Ga0181522_103611131	3300014657	Bog	MDVDAIRSRFIQDNLRRALQERDRERAVRTMRAFRNYFQWFENRLPDLEKLTIVNQLARLEESYADGRPEEAPREPSHVSAH*
Ga0187856_100038710	3300017925	Peatland	MDVEVIRSRFIQDNLRRALLEPDKERAVRTLRAFRNYFQWFENRLPDMDKLSIVGQLARLEEAYACQIPNEGASGPSLTSGR
Ga0187783_105649352	3300017970	Tropical Peatland	MDVDNIRSRFIQENLRNAILARDCARAARTLHAFRLYFQWFEHRVPDPDKPRILNQLASLEEAYTQQASQDRSSRC
Ga0187782_108365231	3300017975	Tropical Peatland	MDVDTIRSRFIQENLRRALQEQDQARAVLALHAFQIYFQWFENRLPAVEKLIIVSQLARLEMLSARGDSGNRASEPLPD
Ga0187804_105520142	3300018006	Freshwater Sediment	MDVDIIRTRFIQENLRSALQEPNREQAVRTLRAFRTYFQWFENLVPDLEKPSIIVQLAKLEEV
Ga0187810_100126793	3300018012	Freshwater Sediment	VDVDAIRSRFIQDNLRRALLERDREQSARAARALRNYFQWFEDRFPEAEKLAITSQLASLEEACSSPR
Ga0184593_1307712	3300019179	Soil	VDIDAIRSRFIQENLRRALEERDRERAVRTLRAFRNYYQWFESRLPDPEKVTIADQLEQLDDAYAGETSDEGPTRASAR
Ga0210401_102478533	3300020583	Soil	MDVDAIRSRFIQDNLRRALMEHDRARAVRALRAFRNYFQWFENRVPDLEKLTIMGQLARLEEAYARDSSEERSSEPSLASAR
Ga0210401_103138492	3300020583	Soil	MDVNIIRSRFIQENLRRALQEQDRERAVRALRAFRLYFEWFETNLPELEKPSIVDQLSKLEETYASSGTSEAPSRVSAH
Ga0210405_108193712	3300021171	Soil	MVERFDMDVAAIRSRFIQENLQRALQEPDKERAARAFRAFRNYFQWFEKQLPDFEKPTIVAQLAQLEQIYAAGSPELGHFPH
Ga0210388_101128622	3300021181	Soil	VDVDTIRSQFIQDNLRRALFDQDRARAARTLRAFRSYFQWFESRLPDLEKLAIARQLARLEARYSSNDARPEPCQATGR
Ga0210388_106930691	3300021181	Soil	MDVDIIRSRFIQDNLRRALMEPDKERAVRALRAFRNYFQWFEHRFPDREKSMIVGQLVSLEEAYARQIPRSGSSGR
Ga0210388_107418922	3300021181	Soil	MDIDAIRSRFIQENLRRALLERDKARAARTLHAFRNYFQWFESRLPDLEKLAILGQLARLEEAYATDSSEEVS
Ga0210388_108073642	3300021181	Soil	MDVDAIRSRFIQDNLRRALMDQDRTRAARALRAFRNYFQWFENRVPDLEKLTIMGQLAKLEEAYARGTSEERFSEPSPASGR
Ga0210388_110680281	3300021181	Soil	MDIDAIRSRFIQENLQRALEQRDRERAVRTLRAFRNYYQWFESRFPDREKLTIAGQLEQLDDAYAGETSDEGTPQASAR
Ga0210388_114497721	3300021181	Soil	MDVDAIRSRFIQENLRRALQEPDKERAARAFRAFHNYFQWFEDRLPDFEKMAIRSQLARLERFEREASR
Ga0210385_107315462	3300021402	Soil	MDVDAIRSRFIQDNLRRALLQQDKTHAARALGAFRKYFQWFEHRLPDLEKLAIMGQLARLEEAYAREGSEEGSSEPYHLNVR
Ga0210385_108769151	3300021402	Soil	VDVDFIRSRFIQDNLRRALQEPDRERAARALRAFRNYFQWFESRLPDLEKLTIVNQLARLEDAYARESSSEGPLHTT
Ga0210389_104403222	3300021404	Soil	MDVNIIRSRFIQENLRRALQEQDRERAVRALRAFRLYFEWFETNLPELEKPSIVDQLSKLEETYASDGTSEAPSRVSAH
Ga0210387_100916263	3300021405	Soil	MDVDAIRSRFIQDNLRRALLEQDKARAARALRAFRSYFQWFEHRLPDLEKLAIMSQLSKLEEAYTRQSTEDRRSEPCHASAR
Ga0210386_101253792	3300021406	Soil	NLRRALMEHDRARAVRALRAFRNYFQWFENRVPDLEKLTIMGQLARLEEAYARDSSEERSSEPSLASAR
Ga0210383_100703842	3300021407	Soil	MDVDIIRSRFIQDNLRRALMEPDKERTVRALRAFRNYFQWFEHRFPDGEKSMIAGQLASLEEAYARQIPSSGSNGR
Ga0210394_1000385520	3300021420	Soil	MDVAAIRSRFIQENLRRALQEPDKERAARAFRAFRNYFQWFEKQLPDFEKPTIVAQLAQLEQIYAAGSPELGHFPH
Ga0242676_10358672	3300022512	Soil	DVDAIRSRFIQDNLRRALLEQDKARAARALRAFRSYFQWFEHRLPDLEKLAIMSQLSKLEEAYTRQSTEDRRSEPCHASAR
Ga0242668_10611242	3300022529	Soil	DVNIIRSRFIQENLRRALQEQDRERAVRALRAFRLYFEWFETNLPELEKPSIVDQLSKLEETYASSGTSEAPSRVSAH
Ga0242658_11126212	3300022530	Soil	DVDVIRSRFIQDNLRSALQEPDKERADRTLRAFRNYFQWFESRVPDLERLTIVGQLANLEAAQVGERPEKPPPHPTGR
Ga0242671_11209131	3300022714	Soil	VDAIRSRFIQDNLRRALMDQDRTRAARALRAFRNYFQWFENRVPDLEKLTIMGQLAKLEEAYARGTSEERFSEPSPASGR
Ga0242671_11259842	3300022714	Soil	VDIIRSRFIQDNLRRALMEPDKERAVRALRAFRNYFQWFEHRFPDREKSMIVGQLVSLEEAYARQIPRSGSSGR
Ga0242678_10710451	3300022715	Soil	VDAIRSRFIQDNLRRALLEQDKARAARALRAFRSYFQWFEHRLPDLEKLAIMSQLSKLEEAYTRQSTEDRRSEPCHASAR
Ga0242678_10785932	3300022715	Soil	DVDAIRSRFIQENLRRALEQRDRERAVRTLRAFRNYYQWFESRFPDREKLTIAGQLEQLDDAYAGETSDEGTPQASAR
Ga0242673_11368922	3300022716	Soil	DVDAIRSRFIQDNLRRALMDQDRTRAARALRAFRNYFQWFENRVPDLEKLTIMGQLAKLEEAYARGTSEERFSEPSPASGR
Ga0242657_11881881	3300022722	Soil	IDAIRSRFIQENLRRALLERDKARAARTLHAFRNYFQWFESRLPDLEKLAILGQLARLEEAYATDSSEEVSAVPYQINAR
Ga0208219_10792951	3300025625	Arctic Peat Soil	VDVDAIRSRFIQENLRRALLEPDRERATRALRAFHNYFQWFENCLPDLDKPAIMRQLAGLEAAYADDRSENEPPKANVR
Ga0208220_11931291	3300025627	Arctic Peat Soil	VDVDAIRSRFIQENLRRALLEPDRERATRALRAFHNYFQWFENCLPDLDKPAIMRQLAGLEAAYADDLSENE
Ga0209483_11354862	3300025862	Arctic Peat Soil	VLPVDVDVIRSRFIQDNLRRALQEPDKERAARTLRAFRKYFQWFENRLPDLERLTIVDQLARLEAAHARENLEKDPSPLTAR
Ga0209525_10266992	3300027575	Forest Soil	MDVDTIRSRFIQDNLRRALMDQDRTRAARALRAFRNYFQWFENRVPDLEKLTIMGQLAKLEEAYARGTSEERFSEPSPASGR
Ga0209221_10502782	3300027609	Forest Soil	MDVDAIRSRFIQENLRRALMEQDKARTARTLHAFRNYFQWFESRLPDFEKLTILRQLARLEEAYSAECSSQPYQPNAR
Ga0209772_102690531	3300027768	Bog Forest Soil	VDVDAIRSRFIQDNLRRALLEQDRARAVRTLRAFRNYFQWFENRLPDLEKIAIIGQLTRLEEAYARESCENRSSEPGQTSAR
Ga0209274_107101541	3300027853	Soil	HRMLLDSKVLRDWRSSSTVDVDAIRSRFIQENLRRALEQRDRERAVRTLRAFRNYYQWFESRFPDHEKVTIAGQLEQLDDAYAGETSDEGTPQASAR
Ga0209169_100102993	3300027879	Soil	VDVDAIRSRFIQENLRRALEQRDRERAVRTLRAFRNYYQWFESRFPDHEKVTIAGQLEQLDDAYAGETSDEGTPQASAR
Ga0209275_108327502	3300027884	Soil	MDVDTIRSRFIQENLRNALMARDRERAARTLRAFRLYFQWFENRVPDMEKISIVSQLARLEEAYTGRSSDDAAPSPSAR
Ga0209624_100146533	3300027895	Forest Soil	MDVDAIRSRFIQENLRRALMERDRTRAVRALRAFRNYFQWFESRLPDLEKVAIIGQLERLEEAYADDGSEARRSEPCQPSAR
Ga0209624_100743982	3300027895	Forest Soil	MDVDVIRSRFIQDNLRRALQEPDKERAARTLRAFSNYFQWFETRLPDLERLAIVGQLASLEAAYRGDNPEIDPSEASAR
Ga0209006_102061233	3300027908	Forest Soil	MDVDFIRSRFIQENLRCALQEPDKERAARTLRAFRNYFQWFESRLPDLERLAIVGQLASLEAAQAGERPEKAQSHPTGR
Ga0209006_103684283	3300027908	Forest Soil	IRSRFIQDNLRRALFDQDRARAARTMRAFRSYFQWFESQLPDLEKLAIMRQLARLEARYSSNDARSEPCPATGR
Ga0209006_111638621	3300027908	Forest Soil	MDVDAIRSRFILENLRRALQEPDKERAARALRAFRNYFQWFEKQLPDFEKLTILAQLAKL
Ga0302225_100308112	3300028780	Palsa	MDVDAIRSRFIQENLRRALMESDRTRAARALRAFRNYFQWFEHRLPGFDKVMILGQLARLEEAYTHDTSEERHP
Ga0302225_102962372	3300028780	Palsa	VPPVDVDFIRSRFIQDNLRRALQEPDKERAARALRAFRNYFQWFESRLPDLERLAIVDQLARLEAANARECLEKDPPRFSAR
Ga0302232_104530251	3300028789	Palsa	VDVDAIRSRFIQDNLRCALEQRDRERAVRTLRAFRNYFQWFESRLPDPEKVTIADQLEQLDDAYGAETSDEGTPRASAR
Ga0308309_105937662	3300028906	Soil	MDIDAIRSRFIQENLRRALEQRDRERAVRTLRAFRNYYQWFESRFPDHEKVTIAGQLEQLDDAYAGETSDEGTPQASAR
Ga0311369_113395732	3300029910	Palsa	VDVDFIRSRFIQDNLRRALQEPDKERAARALRAFRNYFQWFESRLPDLERLAIVDQLARLEAANARECLEKDPPRFSAR
Ga0311340_102455552	3300029943	Palsa	MDVDAIRSRFIQENLRRALMESDRTRAARALRAFRNYFQWFEHRLPGFDKVMILGQLARLEEAYTRDSSEERRVEAR
Ga0311371_105484971	3300029951	Palsa	VDVDAIRSRFIQDNLRCALEQRDRERAVRTLRAFRNYFQWFESRLPDPEKVTIADQLEQLDDAYGAET
Ga0311338_111603822	3300030007	Palsa	MDVDAIRSRFIRENLRRALQEPDKERSARALRAFRNYYQWFEKQLPDFEKPAIVAQLAKLEQIYAEKGRFPH
Ga0302179_100872461	3300030058	Palsa	MDVDAIRSRFIQENLRRALMESDRTRAARALRAFRNYFQWFEHRLPGFDKVMILGQLARLEEAYTRD
Ga0311355_117366602	3300030580	Palsa	IIPDDAPDHSHKLYYLHRGPLDSKVPRGKWSSSTVDVDAIRSRFIQDNLRCALEQRDRERAVRTLRAFRNYFQWFESRLPDPEKVTIADQLEQLDDAYGAETSDEGTPRASAR
Ga0307482_12725161	3300030730	Hardwood Forest Soil	VDIIRSRFIQDNLRRALTEPDKERAVRALRAFRNYFQWFEHRFPDPEKSMIVGQLASLEEAYARQIPRSGSSGR
Ga0170834_1035990582	3300031057	Forest Soil	VDIDSIRSRFIQENLRRALQEPDKERAARALRAFRNYFQWFENRLPDLDKPAILRQLAGLEASYAGERPKNQPPPATVR
Ga0302325_106149283	3300031234	Palsa	MDVDAIRSRFIQENLRRALQEPDKERAARALRAFRNYFQWFEKQLPDFEKLKIVAQLAKLEQLYAPDSPEKGRFPY
Ga0302325_128288622	3300031234	Palsa	MDVDAIRSRFIQENLRRALMESDRTRAARALRAFRNYFQWFEHRLPGFDKVMILGQLARLEEAY
Ga0310686_1150679342	3300031708	Soil	MDVNAIRSRFIQDNLRRALMDQDRTRAARALRAFRNYFQWFENRVPDLEKLTIIGQLAKLEEAYARGTSEERFSEPSPASGR
Ga0307475_111699522	3300031754	Hardwood Forest Soil	MDIDAIRSRFIQENLRRALQEPDKERAVRALRAFRNYFQWFEKQLPDFEKPTIIAQLAKLEQIYAAGSPEQGIFHTSVR
Ga0316046_1130821	3300031817	Soil	VNAIRSRFIQDNLRRALMDQDRTRAARALRAFRNYFQWFENRVPDLEKLTIIGQLAKLEEAYARGTSEERFSEPSPASGR
Ga0316049_1220632	3300031866	Soil	RALMDQDRTRAARALRAFRNYFQWFENRVPDLEKLTIIGQLAKLEEAYARGTSEERFSEPSPASGR
Ga0311301_110845912	3300032160	Peatlands Soil	MDVDAIRSRFIQDNLRRALLERDREQSARAARAMRNYFQWFEDRFPEAEKLAITSQLASLEEACASPR
Ga0348332_113114112	3300032515	Plant Litter	DVNAIRSRFIQDNLRRALMDQDRTRAARALRAFRNYFQWFENRVPDLEKLTIIGQLAKLEEAYARGTSEERFSEPSPASGR
Ga0348332_143520711	3300032515	Plant Litter	MDVDAIRSRFIQDNLRRALMEQDRARAARALRAFRNYFQWFENRLPDLEKLTIIGQLAKLEEAYARGTSEERFSEPSPASGR
Ga0335078_102259353	3300032805	Soil	SCRMDVDAIRSRFIQDNLRRALFEQDRERAARALRAFRLYFQWFESRFADPEKLAIVGQLASLEEAYSGQASEERPLHANAR
Ga0335078_107396752	3300032805	Soil	MDVDAIRSRFIQENLKYALFARDRHRAVRTLHAFRLYFQWYENRIPSFDKFAILSQLARLEEAYTKEAENQESLNPAMP
Ga0335074_100285421	3300032895	Soil	VDVDTIRSRFIQENLRNALMARDAQRAVRTLHAFRLYFQWFENRVPALDKLKILSQLANLEEAYARQAL
Ga0335074_101978661	3300032895	Soil	VPRMDVDAIRSRFIQDNLTRALIEPKSEHAARALRAFRVYYQWFEHRISDLEKPHILGQLARLEGAETGKNSEENYFAI
Ga0335074_109151352	3300032895	Soil	MDVDFIRSRFIQDNLRRALAEKDRERAIGALQAFQLYFQWFAHKVPDPEKVGILAQLARLEQAQ
Ga0335073_100552624	3300033134	Soil	VDVDTIRSRFIQENLRNALMARDAQRAVRTLHAFRLYFQWFENRVPALDKLKILSQLANLEEAYARQALQECPRPN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091949

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences