Scaffold Ga0182024_10000824

Overview

Basic Information

• Taxon OID: 3300014501
• Scaffold ID: Ga0182024_10000824
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81024
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (61.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000522	Metagenome / Metatranscriptome	1055	Y
F001701	Metagenome / Metatranscriptome	649	Y
F006766	Metagenome / Metatranscriptome	365	Y
F007926	Metagenome / Metatranscriptome	342	Y
F090964	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182024_1000082419	F007926	N/A	MPVSQPSNRVFALRSSSLILCVSFFLLLSPLAAKTPVARTLEPGYSVALAAADHFLQAWQSGDVENGLALLTTHAKETAKTDVIEKFFSNPDPSAYEIGRGKLLKGGRYEFPVVLISPASNNNRARRRFSSLVMLDTGKNDWAVDKLP*
Ga0182024_100008242	F006766	GAGG	MYTGTLINDLMVTVERAELGVLRKRLVDEMELQRIFELQVPQMQGERVLVGAA*
Ga0182024_1000082436	F000522	GAGG	MDHHEAVRKFEHLMLKEADHAREVATELEALVAILTTENSRQLAQVQIKASHKLSKEFRELAEKVKEK*
Ga0182024_1000082443	F001701	N/A	MNSASAVKFLYAAYIATWVVHASYIGSLVRRYSRLRRQMKDMGK*
Ga0182024_1000082483	F090964	AGG	LLETAEGGSKDAEAVRREREFQQDLADILEYGTEEDFVAMLKIRKPDIGQEELRMLIMQFRVYVREKRGLY*