Scaffold Ga0182012_10411003

Overview

Basic Information

• Taxon OID: 3300014499
• Scaffold ID: Ga0182012_10411003
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 891
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004392	Metagenome / Metatranscriptome	440	N
F066496	Metagenome / Metatranscriptome	126	N
F082398	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182012_104110031	F066496	AGGAG	MSEKNQIVVVLIVALFLGALVDRSTALKIVAGVVLLWILQNQPTVF
Ga0182012_104110032	F004392	AGGA	MPVNGPETISDLKTSQPVAPEGRSVRAAKDAKPAVARGAATRRRRDQQESSKTNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNNPAS*
Ga0182012_104110033	F082398	N/A	WFDRYDVLMILTVIVIYSSMSGLLRHAGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDRTTETHDGRAHVDAGEKQDIARKETVERCQ*