Scaffold Ga0182015_10000058

Overview

Basic Information

• Taxon OID: 3300014495
• Scaffold ID: Ga0182015_10000058
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 141705
• Total Scaffold Genes: 194
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 160 (82.47%)
• Novel Protein Genes: 28
• Novel Protein Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Associated Families: 28

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F023510	Metagenome	209	N
F024018	Metagenome	207	N
F025900	Metagenome	199	N
F031336	Metagenome	182	N
F035603	Metagenome	171	N
F038954	Metagenome	164	N
F039920	Metagenome	162	N
F041558	Metagenome	159	N
F042700	Metagenome	157	N
F044872	Metagenome	153	N
F050080	Metagenome	145	N
F050093	Metagenome / Metatranscriptome	145	N
F050107	Metagenome	145	N
F053027	Metagenome	141	N
F055379	Metagenome	138	N
F056263	Metagenome	137	N
F056264	Metagenome	137	N
F062380	Metagenome	130	N
F064338	Metagenome	128	N
F066389	Metagenome	126	N
F068368	Metagenome	124	N
F071899	Metagenome	121	N
F071901	Metagenome	121	N
F085039	Metagenome	111	N
F093143	Metagenome	106	N
F098480	Metagenome	103	N
F102387	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182015_100000581	F056264	GAG	MGSPVTISNPAPGCSYLNYPRAVLNTPHPVYGGNLAGFGVGDLPTQFESGLAVFTAITANATSGLIDVAANAIELDATFSDLHTSCTITVFLADGETVVATWNNVSTLNSGNLYAGFAEQRKLIGGGSLVFQVSN
Ga0182015_10000058106	F035603	N/A	MTELVVSARIMIEEAVDYVYMSRVGITCLNRLGELISFVLDPNEAPYTVVVQDCLVLPGLHLMVSHVFVDRYMKWAGLDEPFQVWRWHLDVYPPMGIVPVQYGVYGDSVLRKDRIYRSSFEPVGGPELTDPVLLGMQFAAKDIPTAACTCDLVAERQLYRRNSPFLPHPGNFDARLGILVDYESVLEQDKTPKQEWVM*
Ga0182015_10000058134	F102387	AGGA	MIYDVRVGALLDGSQEIYTIIQSVEASSAQDAAEQVVRGFEDGAEGHEEDWYDGDNDECVDWQFEGEHKVEIDPVVGVTQVVTVDHKATIKIITE*
Ga0182015_1000005814	F024018	AGGAG	LSAHPTTAIDIAKLLAADNVSTADRIWAVDFEAKMPAELITEEDLKCPDCGVVHDPSLENARVFADTVTVLGGPDAQVSVDRVREYVLNRELEAGLHMTDFVFTGVKLLAAAEVV*
Ga0182015_10000058157	F071901	AGGTGG	MGTFNVFSYLDPALVKEEMGDPYASKTPAVWPSEASAERVDKTLFNIVGKCHRASFMRMMGFSVTNPADATGAWKWLMGRAIESGLTDQAKLAGIYAANGVKHFIRDITLSLEFDVIAVDPVDKRGWILECKSYSGYYAKKEIETMNKPKLENLIQICLYILEARTGKRLKAMIQKSLDERKVLDKKVRDFKKNGEVFEHRNRSEADKKMVKSMSDGPIGGKLLYVDRDSASRKEFTIEIYQDFDGFHYPQVDGVPFKIFTMESVYSRYKTQQGYWFRARAQGAQNLAQKGILPPPSLKLVLCAQDVVDGDGFVQKTREDLIAESNYLTLLEDEVRLLPSSFWPPAEYEWSYSPVRVELLFEHGAIGKTKYNDYKKDKIKRLGDWQCSYCSVAGHCLKEARPELQYLITDLQGLLSDTSAEVEIG*
Ga0182015_1000005816	F041558	AGG	VKPTAKTESAAAPAVVAPQTPKFTAGDLVRKALQLRQQHTLNAPAATGEALGAPKGPKPTIVEFKVTLSDGTVLHATGKHADVMVRFSNECQEICQTQGLAAYNGPPLTHYTAEEWAARNE*
Ga0182015_10000058164	F053027	AGGA	MLLTERQIDLRLKCPMFDMEDRHGPSSYECAQKLLRWAVLDAFKGRLVPVATLRGKFESIWNGHTAGWAPDHQQAYYAGLRAGNTAARKTYLFLQHYEVLKPVEAYSVECAGDCIEGEYAVVLRRHDRRTDERPMILQAHEWRPAYCQQPGAIELIRYVHLMASTDYTVPGVYHLPLFRGEPWKMKNFDLPLVRKAVTSILDAVRNTDHPVPGSHCEDCIGKRCRSLAHA*
Ga0182015_10000058169	F066389	AGG	MPPTEELSLPVGAEITATDVPYGSSYTNGHLYGAHAMGNILSGDLQNPDSAPLTEAFDPRTGTTYHGFRFPGNVVQDPRIPVGTIAMINSNCHMVLMAPDGRTVECDVRDVMLNVDPARAMSERIALKAVEFGSGTIGGTMQMSPESHKGLMRAFGFTDEPKPVIVPQEDLFEDRTW*
Ga0182015_10000058171	F050107	GAGG	MAGLWFKPVCDDLLGKIHRWWVNYERGEIFSTREWLDREGNKVDKPTRYAYRTPFKPLEIQHLVSILEALAPTNSLTKDMKELHESMKHRFINLNLKNRPRLLPTGEWMVTLAWYKADIEEVLTLLLEAKSGKSQTIESLAEQQKEQGKDLFEV*
Ga0182015_10000058177	F055379	GGA	MGTWQTLLDVCPYIPIPLMAILFALGLWHEIVCSNRRIAADIKPPPIQDSTLYKIEPSKWSKTKVADNAIGYLT*
Ga0182015_10000058178	F050093	GGAG	MTEETTGVLEKELAGVNEQIVRLEKYKTALNAALRARLDLDGFINAQPQVYSPQTVTLTALTEGKDSPNARPNSLEMARVVLLNLDGEEKTPDEIRALIKKTYGIGPAKTLDQMLYKRASKGTMFYKTAEGRFGLLALRATTEEVRTPTTAVA*
Ga0182015_1000005818	F042700	N/A	MDAQKEAYKLLKEHGEQIRHNKHEAWRVNGHLITITKTRTDDRGWLNKLCEIRRCLRVPAEEVYRQGRCNGKGRFTDAPLAQHSVSCAGPAATR*
Ga0182015_1000005821	F071899	GAGG	MQARVKLTPRIIARLIVGKPVTVNLPAGTSSLSLVTEGKFHEFLRAFHAPEEFDPETSHTEVISLFDLIFGRH*
Ga0182015_1000005825	F023510	GGA	MVKPIDPWPAPPGPNSHIFFKVSAVNPNHYGISPTTFIVEAVNEEAATECVKRAIRMGILLPHGCDGALSPWPTYFQSNALRYLLDGMFIAEELGTLPTLRFFPDPCVRDEWLRYQLSWTARLVEDLQKWWSAVKARSFFTSWFGR*
Ga0182015_1000005829	F031336	AGGAG	VLNGDVIILSPPKDPSWFSDASQSLSLFFWEHSDLIPLLMAEVALAVLIFAGFFWWERRKNKQAFQVGELERMYSAEPIPWPR*
Ga0182015_1000005832	F039920	GGAG	MIDVQALDRTGRRQVLHGLLAQYNLGSESAKVALGMAHQNLPGFTALMERNVRLMRPSAAMEKTLQAVLARPAKPKFHRVAPEVNHNSVRCIGLDKLKF*
Ga0182015_1000005833	F044872	GGAGG	MNTGLLNSFASMVKGSILVTDAIKAAFSKFEGGIPSDDQVLVAISEVVFTVTLNKDARQVLSFYLIQLYANQLFISDPSSEFGDCMRIARREIDSLLSFSVLDRIAKYVWEHREQFLTLWTVYAENSAAHPESTSDILGATLTESIQLLEAA*
Ga0182015_1000005834	F062380	GAGG	MPSDFNDSECNDFEKLLFADLGSTGTCKLIIAYHPGFPLALGRIECASGLPIDVRVNVLESTPVLHTAELVFTGKTTDLCELQMRLTQWAAQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV*
Ga0182015_1000005835	F050080	AGGAGG	MASSFVSRQRNQQRNTPPVAIKPFVRAAQNFALQTKQNREILDGQGMSVGTEVYTEIRMQGTVLAVRDEGIEDEFGRQYIGLVIQINPDKDRFVQTADPTLHAQILALKQGDLVYVTSEWHRNSSGRGFHARAKTITVLAPASTPGPVAVESTADALASAA*
Ga0182015_1000005836	F025900	N/A	MSFCTLDLKLQLQEKCVPVSRTRTPKKNRNNLAPKSKEAQRKIRRWSFVVEVTVGDTTKTFQPPALTIGNLGSARAAAETIRADIASLDQFKDAKVVVKPRAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKLDTVGCPCHEIEDEAARQVEFDRHVTERLGKYVMEEQQAMRRQQMIDAGIDPDQVLNNQLPAEQVPAEFQAAPAAEEAPAEQVNTDPFPDGEFGKEAA*
Ga0182015_1000005837	F056263	AGGAG	MAAVITAEVSTPWLQQAGLKIRSWHGTGMSTFNAWRQHRDQEALEKALARIIETANGHQAKGLPKGSPAYFALRDKATAKIDTFCKKWNVDRTVIEAEAPALREMYALTIPDKQAPASLKLLAAFLGGILSLVLIGAASGLVNVGHNWVMHLFTNFIH*
Ga0182015_1000005839	F005296	N/A	LWLLPSYEAGFWSALIAGKLRDRGKTRELLVYGRPARTCLPILDERLRKAAGTPTKSQAFVARWITTGLRWLANTRAIEYAILLGLKRVWPKGQTICTEVKLCL*
Ga0182015_1000005857	F038954	GGAGG	MGSFVFVVLVLGFIWIVRGLAKAEQRRQLARQAGFTEEEINRIDQKNLAIQTFLAGLIVGPTTFIGMIFLTCLLVWVLFPVGLLATLVLWSLYLKWLRSFYREN*
Ga0182015_1000005858	F093143	GGAG	MSASHATIAAGYVSMAEQELEQDLASTMKTILDRDPNIAHRALVFVLQDECLVTFEKADSHIKSHREV*
Ga0182015_1000005862	F085039	GAG	MFEIVPPEPVVVSDKLAEKILQFIGSFMHADCSSMAEALFAAVPELKLVDNALTTMETVYNDCLLTQQGISDLDGKNLAATMDNIQESFQALTGHECRPCDFNMDPGAGREPEDGEDDDEDAQQSVGEDGNQVAHPAED*
Ga0182015_1000005866	F068368	N/A	MNGETMQDEYALKNGINYRADGYAFCDRCGCNQIVNDRCLKCDVTPTEADRKLADEIRSRCYRTSAGRIPGCYDGRPESFDTERAACILAAMRVSGSKFVPVQPEPQAGVNTGCESRPGA
Ga0182015_1000005877	F098480	AGG	MAKATGAEIMEFYDHHWPEGYYHDDSQIEFHDQNPPPEATDDIWILEPETKYDLEQCGVLISEKDGEAIDFALAFNRWKRTRDVAILAVHVPKAREQEIRDYLKLQGCKVQ*
Ga0182015_100000589	F064338	GGAGG	MATPGLIPIPEDLALFPVPTENVNGLLATSEDLGLTVEEKQELDNYQSALRILGPAAGAVLMCPGNQENVADEDKCPYSSKCPLLRMHKAPADKMCPVERLIVEERFNAWCRELSTDPILAKESDRVAISDLCWIDLQMQRSLHILSKGDEARLTVTNPKDVHPETFLPISWEKVIHPNVELLVTLQTQRRMILKDWMLTPEQKWKREKAEGKGSGKDIASKQSARADKLRAIKSSNED*