Scaffold Ga0182017_10000054

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182017_10000054

Scaffold Ga0182017_10000054

Overview

Basic Information
Taxon OID	3300014494 Open in IMG/M
Scaffold ID	Ga0182017_10000054 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	79215
Total Scaffold Genes	76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (71.05%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021294	Metagenome / Metatranscriptome	219	Y
F068758	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182017_1000005446	F021294	GGA	VTDETTTAPATAPDSARPEPKTGKSGYRTAAAPVSAVDSRQNGGAGVQRSHLRNRKAWLKRRSRAGQSWSQRKVASLTYCPAKARAS*
Ga0182017_1000005453	F068758	GAGG	MDAKPLHCSVCKHPVALHGGQGRRRAALIEDGLTLCDVCAPAGNHQPIRFER*

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