Metagenome Family F068758

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068758
Family Type	Metagenome
Number of Sequences	124
Average Sequence Length	56 residues
Representative Sequence	MDAKQTRCSVCKHPVALVAGQGRRRAALIEDGLTLCDVCAPAGNHQPVRFER
Number of Associated Samples	86
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	65.32 %
% of genes near scaffold ends (potentially truncated)	23.39 %
% of genes from short scaffolds (< 2000 bps)	53.23 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.129 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen (25.806 % of family members)
Environment Ontology (ENVO)	Unclassified (39.516 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.032 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.00% β-sheet: 7.50% Coil/Unstructured: 87.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF13530	SCP2_2	37.90
PF12146	Hydrolase_4	4.84
PF04402	SIMPL	4.03
PF01641	SelR	3.23
PF13419	HAD_2	3.23
PF05154	TM2	2.42
PF00583	Acetyltransf_1	1.61
PF00271	Helicase_C	1.61
PF00313	CSD	1.61
PF00296	Bac_luciferase	1.61
PF10825	DUF2752	0.81
PF13529	Peptidase_C39_2	0.81
PF13692	Glyco_trans_1_4	0.81
PF11225	DUF3024	0.81
PF11288	DUF3089	0.81
PF01625	PMSR	0.81
PF08323	Glyco_transf_5	0.81
PF12697	Abhydrolase_6	0.81
PF01047	MarR	0.81
PF00561	Abhydrolase_1	0.81
PF02789	Peptidase_M17_N	0.81
PF00563	EAL	0.81
PF00005	ABC_tran	0.81
PF14333	DUF4389	0.81
PF04191	PEMT	0.81
PF13646	HEAT_2	0.81
PF00155	Aminotran_1_2	0.81
PF03167	UDG	0.81
PF04343	DUF488	0.81
PF00196	GerE	0.81
PF13527	Acetyltransf_9	0.81
PF00072	Response_reg	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG3471	Predicted secreted (periplasmic) protein	Function unknown [S]	4.03
COG2968	Uncharacterized conserved protein YggE, contains kinase-interacting SIMPL domain	Function unknown [S]	4.03
COG2859	Outer membrane channel-forming protein BP26/OMP28, SIMPL family	Cell wall/membrane/envelope biogenesis [M]	4.03
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	3.23
COG2314	Uncharacterized membrane protein YozV, TM2 domain, contains pTyr	General function prediction only [R]	2.42
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.61
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.81
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.81
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.81
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG0438	Glycosyltransferase involved in cell wall bisynthesis	Cell wall/membrane/envelope biogenesis [M]	0.81
COG0297	Glycogen synthase	Carbohydrate transport and metabolism [G]	0.81
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.81
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.81
COG0260	Leucyl aminopeptidase	Amino acid transport and metabolism [E]	0.81
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.81
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.81
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.13 %
Unclassified	root	N/A	33.87 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.13 %
Unclassified	root	N/A	33.87 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.13 %
Unclassified	root	N/A	33.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.87 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8.87 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.65 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.87 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.84 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	3.23 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.81 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.23 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.42 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.81 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.23 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.42 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.81 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.23 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.42 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.81 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908028\|beta3_all_NODE_46676_len_4495_cov_10_896329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4545	Open in IMG/M
2124908028\|beta3_all_NODE_71111_len_1745_cov_7_365043	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	1795	Open in IMG/M
2124908035\|B3_GZOS_CLC_ConsensusfromContig51389	Not Available	1705	Open in IMG/M
2140918008\|ConsensusfromContig178868	Not Available	1459	Open in IMG/M
3300001213\|JGIcombinedJ13530_109428206	Not Available	537	Open in IMG/M
3300001870\|JGI24129J20441_1005499	Not Available	3881	Open in IMG/M
3300002066\|JGIcombinedJ21911_10022138	Not Available	2301	Open in IMG/M
3300002549\|JGI24130J36418_10001784	All Organisms → cellular organisms → Bacteria → Terrabacteria group	7491	Open in IMG/M
3300005938\|Ga0066795_10061216	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300005947\|Ga0066794_10182397	Not Available	631	Open in IMG/M
3300006640\|Ga0075527_10011495	Not Available	2254	Open in IMG/M
3300006795\|Ga0075520_1368883	Not Available	583	Open in IMG/M
3300009029\|Ga0066793_10102934	All Organisms → cellular organisms → Bacteria	1655	Open in IMG/M
3300009519\|Ga0116108_1050274	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1324	Open in IMG/M
3300009548\|Ga0116107_1037773	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1731	Open in IMG/M
3300009549\|Ga0116137_1001156	All Organisms → cellular organisms → Bacteria	18421	Open in IMG/M
3300009552\|Ga0116138_1004110	All Organisms → cellular organisms → Bacteria	6368	Open in IMG/M
3300009614\|Ga0116104_1000460	All Organisms → cellular organisms → Bacteria	28301	Open in IMG/M
3300011340\|Ga0151652_12549268	Not Available	512	Open in IMG/M
3300014490\|Ga0182010_10009256	All Organisms → cellular organisms → Bacteria	4472	Open in IMG/M
3300014490\|Ga0182010_10015373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3457	Open in IMG/M
3300014490\|Ga0182010_10029079	All Organisms → cellular organisms → Bacteria	2552	Open in IMG/M
3300014490\|Ga0182010_10035450	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2325	Open in IMG/M
3300014490\|Ga0182010_10132015	Not Available	1275	Open in IMG/M
3300014490\|Ga0182010_10329119	Not Available	824	Open in IMG/M
3300014494\|Ga0182017_10000054	All Organisms → cellular organisms → Bacteria	79215	Open in IMG/M
3300014494\|Ga0182017_10000740	All Organisms → cellular organisms → Bacteria	25679	Open in IMG/M
3300014494\|Ga0182017_10011099	All Organisms → cellular organisms → Bacteria	6374	Open in IMG/M
3300014494\|Ga0182017_10215273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1223	Open in IMG/M
3300014494\|Ga0182017_10648331	Not Available	641	Open in IMG/M
3300014494\|Ga0182017_10909391	Not Available	529	Open in IMG/M
3300014496\|Ga0182011_10112253	Not Available	1896	Open in IMG/M
3300014496\|Ga0182011_10287218	Not Available	1095	Open in IMG/M
3300014496\|Ga0182011_10549366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	739	Open in IMG/M
3300014498\|Ga0182019_10002333	All Organisms → cellular organisms → Bacteria	9721	Open in IMG/M
3300014498\|Ga0182019_10026519	All Organisms → cellular organisms → Bacteria	3217	Open in IMG/M
3300014498\|Ga0182019_10725109	Not Available	706	Open in IMG/M
3300014498\|Ga0182019_10742432	Not Available	698	Open in IMG/M
3300014502\|Ga0182021_10037669	All Organisms → cellular organisms → Bacteria	5679	Open in IMG/M
3300014502\|Ga0182021_10133195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2889	Open in IMG/M
3300014502\|Ga0182021_10140634	All Organisms → cellular organisms → Bacteria	2807	Open in IMG/M
3300014502\|Ga0182021_10159777	All Organisms → cellular organisms → Bacteria	2626	Open in IMG/M
3300014502\|Ga0182021_10218030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2232	Open in IMG/M
3300014502\|Ga0182021_10398773	All Organisms → cellular organisms → Bacteria	1632	Open in IMG/M
3300014502\|Ga0182021_11161580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	930	Open in IMG/M
3300014502\|Ga0182021_12840291	Not Available	581	Open in IMG/M
3300014839\|Ga0182027_10028085	All Organisms → cellular organisms → Bacteria	7349	Open in IMG/M
3300014839\|Ga0182027_10031797	All Organisms → cellular organisms → Bacteria → Proteobacteria	6845	Open in IMG/M
3300014839\|Ga0182027_10133287	All Organisms → cellular organisms → Bacteria	2946	Open in IMG/M
3300017929\|Ga0187849_1000249	All Organisms → cellular organisms → Bacteria	77831	Open in IMG/M
3300017929\|Ga0187849_1051061	Not Available	1933	Open in IMG/M
3300017931\|Ga0187877_1046288	Not Available	2019	Open in IMG/M
3300017938\|Ga0187854_10002741	All Organisms → cellular organisms → Bacteria	14683	Open in IMG/M
3300017940\|Ga0187853_10007919	All Organisms → cellular organisms → Bacteria → Proteobacteria	6865	Open in IMG/M
3300018005\|Ga0187878_1000030	All Organisms → cellular organisms → Bacteria	153492	Open in IMG/M
3300018018\|Ga0187886_1125531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1042	Open in IMG/M
3300018019\|Ga0187874_10377817	Not Available	572	Open in IMG/M
3300018023\|Ga0187889_10305429	Not Available	703	Open in IMG/M
3300018025\|Ga0187885_10000933	All Organisms → cellular organisms → Bacteria	34332	Open in IMG/M
3300019788\|Ga0182028_1362951	Not Available	2044	Open in IMG/M
3300019788\|Ga0182028_1518968	All Organisms → cellular organisms → Bacteria	2047	Open in IMG/M
3300023311\|Ga0256681_10442921	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1205	Open in IMG/M
3300025409\|Ga0208321_1000419	All Organisms → cellular organisms → Bacteria	28273	Open in IMG/M
3300025650\|Ga0209385_1213842	Not Available	525	Open in IMG/M
3300025725\|Ga0209638_1000254	All Organisms → cellular organisms → Bacteria	35869	Open in IMG/M
3300025725\|Ga0209638_1000941	All Organisms → cellular organisms → Bacteria	19149	Open in IMG/M
3300025725\|Ga0209638_1005309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7420	Open in IMG/M
3300025725\|Ga0209638_1148444	Not Available	759	Open in IMG/M
3300025739\|Ga0209745_1025625	Not Available	2429	Open in IMG/M
3300025852\|Ga0209124_10244995	Not Available	693	Open in IMG/M
3300025857\|Ga0209014_10034210	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2311	Open in IMG/M
3300025857\|Ga0209014_10035654	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2254	Open in IMG/M
3300025857\|Ga0209014_10194799	Not Available	707	Open in IMG/M
3300025864\|Ga0209429_10374308	Not Available	529	Open in IMG/M
3300026476\|Ga0256808_1068325	Not Available	539	Open in IMG/M
3300027896\|Ga0209777_10000866	All Organisms → cellular organisms → Bacteria	46730	Open in IMG/M
3300027896\|Ga0209777_10003710	All Organisms → cellular organisms → Bacteria	18709	Open in IMG/M
3300028069\|Ga0255358_1002209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2538	Open in IMG/M
3300028558\|Ga0265326_10211989	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300028654\|Ga0265322_10122876	Not Available	739	Open in IMG/M
3300028665\|Ga0302160_10082598	All Organisms → cellular organisms → Bacteria → Terrabacteria group	689	Open in IMG/M
3300028666\|Ga0265336_10112276	Not Available	812	Open in IMG/M
3300028861\|Ga0302259_1033777	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1187	Open in IMG/M
3300028868\|Ga0302163_10233209	Not Available	519	Open in IMG/M
3300029923\|Ga0311347_10624896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	655	Open in IMG/M
3300029989\|Ga0311365_10006040	All Organisms → cellular organisms → Bacteria	10849	Open in IMG/M
3300029989\|Ga0311365_10922918	Not Available	754	Open in IMG/M
3300030003\|Ga0302172_10015525	All Organisms → cellular organisms → Bacteria → Proteobacteria	2186	Open in IMG/M
3300030019\|Ga0311348_10693183	Not Available	759	Open in IMG/M
3300030294\|Ga0311349_10275373	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300030838\|Ga0311335_10018916	All Organisms → cellular organisms → Bacteria	4166	Open in IMG/M
3300031232\|Ga0302323_100741475	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300031232\|Ga0302323_102042466	Not Available	651	Open in IMG/M
3300031250\|Ga0265331_10118305	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1212	Open in IMG/M
3300031281\|Ga0307420_1102388	All Organisms → cellular organisms → Bacteria → Terrabacteria group	966	Open in IMG/M
3300031344\|Ga0265316_11161183	Not Available	535	Open in IMG/M
3300031355\|Ga0307421_1001519	All Organisms → cellular organisms → Bacteria	13938	Open in IMG/M
3300031521\|Ga0311364_10204461	All Organisms → cellular organisms → Bacteria	2031	Open in IMG/M
3300031726\|Ga0302321_103282082	Not Available	527	Open in IMG/M
3300031727\|Ga0316576_10038877	All Organisms → cellular organisms → Bacteria → Proteobacteria	3414	Open in IMG/M
3300031902\|Ga0302322_102966646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300031918\|Ga0311367_11321645	Not Available	712	Open in IMG/M
3300032828\|Ga0335080_11071094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	817	Open in IMG/M
3300032829\|Ga0335070_10255924	All Organisms → cellular organisms → Bacteria	1714	Open in IMG/M
3300032893\|Ga0335069_10457349	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1488	Open in IMG/M
3300032897\|Ga0335071_10138403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2386	Open in IMG/M
3300032897\|Ga0335071_10878901	Not Available	844	Open in IMG/M
3300032955\|Ga0335076_10001938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	20364	Open in IMG/M
3300033408\|Ga0316605_12328600	Not Available	521	Open in IMG/M
3300033433\|Ga0326726_10289173	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300033482\|Ga0316627_101826991	All Organisms → cellular organisms → Bacteria → Terrabacteria group	626	Open in IMG/M
3300033489\|Ga0299912_10091950	All Organisms → cellular organisms → Bacteria	2659	Open in IMG/M
3300033502\|Ga0326731_1095123	Not Available	686	Open in IMG/M
3300033513\|Ga0316628_103160663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	600	Open in IMG/M
3300033798\|Ga0334821_063161	All Organisms → cellular organisms → Bacteria → Terrabacteria group	735	Open in IMG/M
3300033819\|Ga0334816_015453	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1519	Open in IMG/M
3300033821\|Ga0334818_000191	All Organisms → cellular organisms → Bacteria	20870	Open in IMG/M
3300033825\|Ga0334843_001147	All Organisms → cellular organisms → Bacteria	4101	Open in IMG/M
3300033827\|Ga0334848_000130	All Organisms → cellular organisms → Bacteria	23272	Open in IMG/M
3300033890\|Ga0334810_110487	All Organisms → cellular organisms → Bacteria → Terrabacteria group	661	Open in IMG/M
3300033891\|Ga0334811_004069	All Organisms → cellular organisms → Bacteria → Proteobacteria	4287	Open in IMG/M
3300033891\|Ga0334811_017294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2021	Open in IMG/M
3300033891\|Ga0334811_060512	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300034195\|Ga0370501_0001035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6584	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.16%
Host-Associated	Host-Associated	4.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.81%
Aquatic	Environmental → Aquatic	19.35%
Plants	Host-Associated → Plants	4.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.23%
Peat	Environmental → Terrestrial → Peat	22.58%
Freshwater	Environmental → Aquatic → Freshwater	16.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.84%
Marine	Environmental → Aquatic → Marine	2.42%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	36.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	22.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	16.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.52%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.03%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.61%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.61%
Lake	Environmental → Aquatic → Freshwater → Lake	0.81%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	28.23%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	22.58%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	16.13%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.06%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.06%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.03%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.61%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.61%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.61%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.81%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.81%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	25.81%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	12.90%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	12.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	8.06%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	8.06%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.26%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	4.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	3.23%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.61%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.61%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.61%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.61%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.81%
Wetland	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland	0.81%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.81%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.81%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908028	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
2124908035	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001870	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211	Environmental	Open in IMG/M
3300002066	Barrow Graham LP Ref core NGADG0002-211 (Barrow Graham LP Ref core NGADG0002-211,NGADG0004-311, ASSEMBLY_DATE=20131004)	Environmental	Open in IMG/M
3300002549	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300005947	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190	Environmental	Open in IMG/M
3300006640	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009548	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100	Environmental	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009614	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_150	Environmental	Open in IMG/M
3300011340	Combined Assembly of Wetland Metatranscriptomes	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300019788	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)	Environmental	Open in IMG/M
3300023311	Combined Assembly of Gp0281739, Gp0281740, Gp0281741	Environmental	Open in IMG/M
3300025409	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_150 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025725	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211 (SPAdes)	Environmental	Open in IMG/M
3300025739	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-312 (SPAdes)	Environmental	Open in IMG/M
3300025852	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-22A (SPAdes)	Environmental	Open in IMG/M
3300025857	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212 (SPAdes)	Environmental	Open in IMG/M
3300025864	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212 (SPAdes)	Environmental	Open in IMG/M
3300026476	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PR6	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300028069	Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T0	Environmental	Open in IMG/M
3300028558	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG	Host-Associated	Open in IMG/M
3300028654	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG	Host-Associated	Open in IMG/M
3300028665	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_3	Environmental	Open in IMG/M
3300028666	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG	Host-Associated	Open in IMG/M
3300028861	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_4	Environmental	Open in IMG/M
3300028868	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_3	Environmental	Open in IMG/M
3300029923	II_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030003	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_3	Environmental	Open in IMG/M
3300030019	II_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031281	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-40	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031355	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-70	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031727	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5	Host-Associated	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033502	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF9FY SIP fraction	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033798	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-S	Environmental	Open in IMG/M
3300033819	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-M	Environmental	Open in IMG/M
3300033821	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-X0	Environmental	Open in IMG/M
3300033825	Peat soil microbial communities from Stordalen Mire, Sweden - 714 E1 1-5	Environmental	Open in IMG/M
3300033827	Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 5-9	Environmental	Open in IMG/M
3300033890	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-M	Environmental	Open in IMG/M
3300033891	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-D	Environmental	Open in IMG/M
3300034195	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
beta3_all_00148180	2124908028	Soil	MDAKQTRCSVCKHPVALVAGPGRRRAALMEDGLTLCDVCAPSGNHQPIRFER
beta3_all_00352920	2124908028	Soil	MTDQADRIDAKQTRCSVCKHPVAITAGPGRRRAALIEDGLTLCDVCAPSGNHQPIRFEL
B3_GZOS_CLC_00785810	2124908035	Soil	MTDQADRIDAKQTRCSVCKHPVAITAGPGRRRAALIEDGLTLCDVCAPSGNHQP
Bog_all_C_05946010	2140918008	Soil	MDAEPLRCSVCKHPVALHAGQGQRRTALIEDGLTLCDVCAPGGNYQPVRFER
JGIcombinedJ13530_1094282061	3300001213	Wetland	MDAKTLRCSVCKHAMVLRGGQGRRRTALIEDGLTLCDVCAPSGNHQPIRFER*
JGI24129J20441_10054994	3300001870	Arctic Peat Soil	MTGMSLRGDRVDAKPLRCSVCKHPVWVQAQHGRRRAVLIEDGLTLCNVCAPSGNHQPVRFEY*
JGIcombinedJ21911_100221381	3300002066	Arctic Peat Soil	MSLRGDRVDAKPLRCSVCKHPVWVQAQHGRRRAVLIEDGLTLCNVCAPSGNHQPVRFEY*
JGI24130J36418_100017845	3300002549	Arctic Peat Soil	MEAKPLRCSVCKHPVSLQAGRGRRRAALIEDGLTLCDVCAPSGNHQPVRFEV*
Ga0066795_100612162	3300005938	Soil	MDAEPLRCSVCKHPVALHAGQGHRRTALIEDGLTLCDVCAPAGNHQPVRFER*
Ga0066794_101823971	3300005947	Soil	MSIRGDHPDAKPIHCSVCKHPLVLRGGHGSRRAALIEDGLTLCDVCAPA
Ga0075527_100114951	3300006640	Arctic Peat Soil	MEAKLLRCSVCKHPVSLQAGRGRRRAALIEDGLTLCDVCAPSGNQQPVRFEA*
Ga0075520_13688831	3300006795	Arctic Peat Soil	MDDRTSIKGDRMDAEPLRCSVCKHPVALHAGQGHRRTALIEDGLTLCDVCAPA
Ga0066793_101029342	3300009029	Prmafrost Soil	MSIRGDHADAKPIHCSVCKHPLVLRGGHGSRRAALMEDGLTLCDVCAPAGNHQPVRFER*
Ga0116108_10502742	3300009519	Peatland	MSNRGDRADAKPLRCSVCKHPVVLNGGRGRRRAALIEDCLTLCDVCAPSGNNQPIRFEP*
Ga0116107_10377732	3300009548	Peatland	MSERMSSRGDRTEAKLLRCSVCKQPVDLHGGQGRRRAALIEDGLTLCDVCAPAGNQQPVRFERE*
Ga0116137_10011563	3300009549	Peatland	MTDQGDRMDAKQTRCSVCKHPVALVAGQGRRRAALIEDGLTLCDVCAPAGNNQVIRPER*
Ga0116138_10041104	3300009552	Peatland	MADRPSTKADRMAAKPLRCSVCKHPVALHAGEGYRRAALIEDGLTLCDVCAPAGNGQPVRLEP*
Ga0116104_10004601	3300009614	Peatland	VSWCQGMSNRGDRADAKPLRCSVCKHPVVLNGGRGRRRAALIEDCLTLCDVCAPSGNNQPIRFEP*
Ga0151652_125492682	3300011340	Wetland	MTDQSDRMEAKQLRCSICKHPVAIVPTPGRRRTALIEDGLTLCDVCAPSGNHQPVRFER*
Ga0182010_100092563	3300014490	Fen	MDAKQTRCSVCKHPVALVAGQGRRRAALIEDGLTLCDVCAPAGNHQPVRFER*
Ga0182010_100153733	3300014490	Fen	MLIRDDRLDTKLSRCSVCKHPIAPHAGPGFRRTALIEDGLTLCDVCAPSGNLQPARFAR*
Ga0182010_100290793	3300014490	Fen	MSTEGDRMEAKEVRCSVCKRPLALRAGQGRRLVALVEDGLTLCDVCAPAGNHQPVRSER*
Ga0182010_100354503	3300014490	Fen	MTDQGDRMDAKQTRCSVCKHPVALVAGPGRRRAALMEDGLTLCDVCAPSGNHQPIRFER*
Ga0182010_101320152	3300014490	Fen	MTDQADRIDAKQTRCSVCKHPVAITAGPGRRRAALIEDGLTLCDVCAPSGNHQPIRFEL*
Ga0182010_103291191	3300014490	Fen	MDAKPLRCSVCKHVVALRGGQGRRHAALIEDGLTLCDVCAPAGNHQPIRFER*
Ga0182017_1000005453	3300014494	Fen	MDAKPLHCSVCKHPVALHGGQGRRRAALIEDGLTLCDVCAPAGNHQPIRFER*
Ga0182017_1000074019	3300014494	Fen	MDAKQTRCSVCKHPVALVAGPGRRRAALMEDGLTLCDVCAPSGNHQPIRFER*
Ga0182017_100110992	3300014494	Fen	MDAKPLRCSVCKHEVALHGGQGRRRAALIEDGLTLCDVCAPSGNHQPIRFER*
Ga0182017_102152731	3300014494	Fen	MLIRDDRLDTKLSRCSVCKHPIAPHAGPGFRRTALIEDGLTLCDVCAPSGNHQPARFAR*
Ga0182017_106483311	3300014494	Fen	MDSRGERMDAKPLHCSVCKQPVVIHGHGRRRAALIEDGLTLCDVCAPSGNHQAIRFER*
Ga0182017_109093911	3300014494	Fen	MDAKPLRCSVCKHVVALHGGQGRRRAALIEDGLTLCDVCAPSGNHQP
Ga0182011_101122532	3300014496	Fen	MDAKQTRCSVCKHPVALVAGQGRRRAALIEDGLTLCDVCAPEGNHQPVRFER*
Ga0182011_102872182	3300014496	Fen	MDGMSIRSERVEAKPLCCSVCKNPVDLHGGQGRRRAALIEDGLTLCDVCAPAGNQQPVRFERE*
Ga0182011_105493662	3300014496	Fen	MPTEGDRMEAKEVRCSVCKHPLALRAGQGRRLAALIEDGLTLCDVCAPAGNHQPVRFER*
Ga0182019_100023336	3300014498	Fen	MTDQADRMDAKQTRCSVCKHPVAITAGPGRRRAALIEDGLTLCDVCAPSGNHQPIRFER*
Ga0182019_100265193	3300014498	Fen	MDAKLVRCSVCKHVVALQGGQGRRRAALIEDGLTLCDVCAPSGNHQPIRFER*
Ga0182019_107251092	3300014498	Fen	MDAKPLRCSVCKHVVALRGGQGRRHAALIEDGLTLCDVCAPAGN
Ga0182019_107424321	3300014498	Fen	PLHCSVCKQPVVIHGHGRRRAALIEDGLTLCDVCAPSGNHQAIRFER*
Ga0182021_100376693	3300014502	Fen	MDAKPLHCSVCKHVIGLRGGQGRRRAALIEDGLTLCDVCAPAGNHQPIRFER*
Ga0182021_101331953	3300014502	Fen	MDAKTLRCSICKLPVVLRGGRGHRRAALIEDGLTLCDVCAPSGNNQPLRYAAQN*
Ga0182021_101406342	3300014502	Fen	MSALVSIKDDCMDAKPLRCSVCKQPVALQAAKGQRRAALMEDGLTLCDVCAPAGNMQRVRFER*
Ga0182021_101597771	3300014502	Fen	AKPLQCSVCKNPVTIHGSQGRRRAALIEDGLTLCDVCAPAGNHQPIRFER*
Ga0182021_102180302	3300014502	Fen	MDAKPLYCSVCKHPVVIHGHGRRRAALIEDGLTLCDVCAPSGNQQPVRFER*
Ga0182021_103987732	3300014502	Fen	MDAKPLQCSVCKHPVALHGGHGRRRAALIEDGLTLCDVCAPSGNQQPVRFER*
Ga0182021_111615801	3300014502	Fen	IRGDRMDAKPLRCSVCKHVVALRGGQGRRHAALIEDGLTLCDVCAPAGNHQPIRFER*
Ga0182021_128402911	3300014502	Fen	MDAEPLRCSVCKHPVALRAGQGQRRTALIEDGLTLCDVCAPGGNYQPVRFER*
Ga0182027_100280853	3300014839	Fen	MGDSMSIRGDRMDAKQLRCSVCKHVVALHGGQGRRRAALIEDGLTLCDVCAPSGNHQPVRFER*
Ga0182027_100317972	3300014839	Fen	MVIRGDRMDAKPLHCSVCKHPVSIHGGNGCRRAALIEDGLTLCDVCAPAGNRQPVRFER*
Ga0182027_101332873	3300014839	Fen	MSTEGDRMEAKEVRCSVCKRPVALRAGQGRRLVALVEDGLTLCDVCAPAGNHQPVRSER*
Ga0187849_100024951	3300017929	Peatland	MSNRGDRADAKPLRCSVCKHPVVLNGGRGRRRAALIEDCLTLCDVCAPSGNNQPIRFEP
Ga0187849_10510613	3300017929	Peatland	MAAKPLRCSVCKHPVALHAGEGYRRAALIEDGLTLCDVCAPAGNGQPVRLEP
Ga0187877_10462881	3300017931	Peatland	MTDQGDRMDAKQTRCSVCKHPVALVAGQGRRRAALIEDGLTLCDVCAPAGNNQVIRPER
Ga0187854_1000274115	3300017938	Peatland	MDAKPLQCSVCKHPVAVHAGHGCRRAALIEDGLTLCDVCAPAGNHQQVRFER
Ga0187853_100079195	3300017940	Peatland	MSSRGDRTEAKLLRCSVCKQPVDLHGGQGRRRAALIEDGLTLCDVCAPAGNQQPVRFERE
Ga0187878_100003096	3300018005	Peatland	MDAKQTRCSVCKHPVAITASPGRRRAALIEDGLTLCDVCAPSGNHQQVRFER
Ga0187886_11255311	3300018018	Peatland	MDAKQTRWSVCKHPVAITASPGRRRAALIEDGLTLCDVCAPSGNHQQVRFER
Ga0187874_103778172	3300018019	Peatland	MSERMSSRGDRTEAKLLRCSVCKQPVDLHGGQGRRRAALIEDGLTLCDVCAPAGNQQPVRFERE
Ga0187889_103054291	3300018023	Peatland	MAAKPLRCSVCKHPVALHAGQGRRRAALIEDGLTLCDVCAPEGNQQ
Ga0187885_1000093315	3300018025	Peatland	MDAKQTRCSVCKHPVALVAGQGRRRAALIEDGLTLCDVCAPAGNNQVIRPER
Ga0182028_13629513	3300019788	Fen	MTDQGDRMDAKQTRCSVCKHPVALVAGQGRRRAALIEDGLTLCDVCAPEGNHQPVRFER
Ga0182028_15189681	3300019788	Fen	SVCKHPVALHGGEGRRRAALIEDGLTLCDVCAPAGNHQPVRFES
Ga0256681_104429212	3300023311	Freshwater	MSTEGDRTEAKEVRCSVCKHPVALRAGQGRRLAALIEDGLTLCDVCAPAGNHQPVRFER
Ga0208321_100041936	3300025409	Peatland	VSWCQGMSNRGDRADAKPLRCSVCKHPVVLNGGRGRRRAALIEDCLTLCDVCAPSGNNQPIRFEP
Ga0209385_12138421	3300025650	Arctic Peat Soil	MLIRADRLDTKLSRCSVCKHPIAPHAGPGFRRTALIEDGLTLCDVCAPSGNHQPVRFAPSGE
Ga0209638_100025421	3300025725	Arctic Peat Soil	MEAKPLRCSVCKHPVSLQAGRGRRRAALIEDGLTLCDVCAPSGNHQPVRFEV
Ga0209638_100094110	3300025725	Arctic Peat Soil	MTGMSLRGDRVDAKPLRCSVCKHPVWVQAQHGRRRAVLIEDGLTLCNVCAPSGNHQPVRFEY
Ga0209638_10053096	3300025725	Arctic Peat Soil	MEAKLLRCSVCKHPVSLQAGRGRRRAALIEDGLTLCDVCAPSGNQQPVRFEA
Ga0209638_11484442	3300025725	Arctic Peat Soil	MSIRVDHLDAKPLYCSVCKLPLVLRGGQGRRRAALIEDGLTLCDVCAPAGNHQPIRF
Ga0209745_10256251	3300025739	Arctic Peat Soil	MTDQGDRMDAKPLSCSVCKHPLVLRGGHGRRRAALIEDGLTLCDVCAPSGNQQPV
Ga0209124_102449952	3300025852	Arctic Peat Soil	MLIRADRLDTKLSRCSVCKHPIAPHAGPGFRRTALIEDGLTLCDVCAPSGNHQPARFAR
Ga0209014_100342105	3300025857	Arctic Peat Soil	MAIRGDDMEAKPLRCSVCKHPVSLQAGRGRRRAALIEDGLTLCDVCAPSGNHQPVRFEV
Ga0209014_100356541	3300025857	Arctic Peat Soil	MEAKPLRCSVCKHPVSLQAGRGQRRAALIEDGLTLCDVCAPSGNHQPVRFEV
Ga0209014_101947992	3300025857	Arctic Peat Soil	MDDRTSVRGDRMDAEPLRCSVCKHPVALHAGQGHRRTALIEDGLTLCDVCAPAGNH
Ga0209429_103743081	3300025864	Arctic Peat Soil	MDAKPLRCSVCKHLVSLRAEHGRRRAALIEDGLTLCDVCAPSGNHQP
Ga0256808_10683251	3300026476	Sediment	MPPREDRVQGKPLCCSVCKHPVSIQPMPGHRRAALIEDGLTLCGVCAPEGNRQPVRFER
Ga0209777_1000086612	3300027896	Freshwater Lake Sediment	MDAKPLQCSVCKHPVAIHAGHGRRRAALIEDGLTLCDVCAPAGNHQSVRFER
Ga0209777_1000371012	3300027896	Freshwater Lake Sediment	MDDRTSIRGDHTDAEPRRCSVCKHPVALHAGQGRRRAALIEDGQTLCDVCAPEGNHQAVRFER
Ga0255358_10022092	3300028069	Soil	MTDQGDRMDAKQTRCSVCKHPVALVAGPGRRRAALMEDGLTLCDVCAPSGNHQPIRFER
Ga0265326_102119891	3300028558	Rhizosphere	RADRLDTKLSRCSVCKHPIAPHAGPGFRRTALIEDGLTLCDVCAPSGNHQPVRFAPSGE
Ga0265322_101228761	3300028654	Rhizosphere	MDAKPLHCSVCKHLVGLRAGQGRRRAALIEDGLTLCDVCAPSGNNQPMRFIPSR
Ga0302160_100825981	3300028665	Fen	MTDQADRMDAKQTRCSVCKHPVAITAGPGRRRAALIEDGLTLCDVCAPSGNHQPIRFER
Ga0265336_101122762	3300028666	Rhizosphere	MSIRGNRMDAKPLHCSVCKHLVGLRAGQGRRRAALIEDGLTLCDVCAPSGNNQPMRFIPS
Ga0302259_10337771	3300028861	Fen	MDAKQTRCSVCKHPVAITAGPGRRRAALIEDGLTLCDVCAPSGNHQPIRFER
Ga0302163_102332091	3300028868	Fen	QVAHEADPRMTDQADRIDAKQTRCSVCKHPVAITAGPGRRRAALIEDGLTLCDVCAPSGNHQPIRFEL
Ga0311347_106248962	3300029923	Fen	LDTKLSRCSVCKHPIAPHAGPGFRRTALIEDGLTLCDVCAPSGNLQPARFAR
Ga0311365_100060401	3300029989	Fen	QTRCSVCKHPVAITAGPGRRRAALIEDGLTLCDVCAPSGNHQPIRFER
Ga0311365_109229182	3300029989	Fen	MEAKPIRCSVCKHLVSLQPGRGRRRAALIEDGLTLCDVCAPSGNH
Ga0302172_100155251	3300030003	Fen	RMDAKQTRCSVCKHPVAITAGPGRRRAALIEDGLTLCDVCAPSGNHQPIRFER
Ga0311348_106931831	3300030019	Fen	CSICKLPVVLRGGRGHRRAALIEDGLTLCDVCAPSGNNQPLRYAAQN
Ga0311349_102753732	3300030294	Fen	MLIRDDRLDTKLSRCSVCKHPIAPHAGPGFRRTALIEDGLTLCDVCAPSGNLQPARFAR
Ga0311335_100189165	3300030838	Fen	MDAKLVRCSVCKHLLAPHGGQGRRRAALIEDGLTLCDVCAPSGNHQPVRFER
Ga0302323_1007414752	3300031232	Fen	MSGMSIRGERLEAKPIHCSVCKHPVSLEAGRGRRRAALIEDGLTLCDVCAPSGNHQPIRFEV
Ga0302323_1020424661	3300031232	Fen	LIRDDRLDTKLSRCSVCKHPIAPHAGPGFRRTALIEDGLTLCDVCAPSGNLQPARFAR
Ga0265331_101183051	3300031250	Rhizosphere	APVANCNASCGIAYEADPRMTDQGDRMDAKQTRCSVCKHPVALVAGPGRRRAALMEDGLTLCDVCAPSGNHQPVRFER
Ga0307420_11023881	3300031281	Salt Marsh	SLPAQHFGTRMTPRQDRAAAKPLHCSVCKHPLSLQPAPGRRLAALIEDGLTLCGVCAPAGNHQPIRFER
Ga0265316_111611832	3300031344	Rhizosphere	MDAKPLQCSVCKHPVALHGGHGRRRTALIEDGLTLCDVCAPSGNHQPIRFER
Ga0307421_100151912	3300031355	Salt Marsh	MTPRQDRAAAKPLHCSVCKHPLSLQPAPGRRLAALIEDGLTLCGVCAPAGNHQPIRFER
Ga0311364_102044611	3300031521	Fen	MDAKTLRCSICKLPVVLRGGRGHRRAALIEDGLTLCDVCAPSGNNQPLRYAAQN
Ga0302321_1032820821	3300031726	Fen	MLIRDDRLDTKLSRCSVCKHPIAPHAGPGFRRTALIEDSLTLCDVCAPSGNLQPARFAR
Ga0316576_100388775	3300031727	Rhizosphere	MTPRSDRTEAKPLHCSVCKHPLSLHPAPGRRRAALIEDGLTLCGVCAPAGNQQPIRFER
Ga0302322_1029666462	3300031902	Fen	AKPIHCSVCKHPVSLEAGRGRRRAALIEDGLTLCDVCAPSGNHQPIRFEV
Ga0311367_113216451	3300031918	Fen	MDAKPLRCSVCKHVVALRGGQGRRRAALIEDGLTLCDVCAPAGN
Ga0335080_110710942	3300032828	Soil	MPIEGTRVDSKTLRCSVCKHPVEIHGGRGRRRAALIEDGLTLCDVCAPSGNQQPVRFER
Ga0335070_102559242	3300032829	Soil	MVIGSTRMDAKTLRCSICKHPVVIRGDRGRRHAALMEDGLTLCDVCAPSGNHQPIRFER
Ga0335069_104573492	3300032893	Soil	MEAKTLRCSVCKLPVEIRGGRGRRHAALIEDGLTLCDVCAPSGNHQPVRFER
Ga0335071_101384033	3300032897	Soil	MDAKTLRCSICKHPVVIRGDRGRRHAALMEDGLTLCDVCAPSGNHQPIRFER
Ga0335071_108789011	3300032897	Soil	MTEQSDRMDAKQPRCSICKHPVSLVGGQGRRRAALIEDGLTLCDVCAPSGNHQPVRFER
Ga0335076_100019381	3300032955	Soil	MDAKQLRCSVCKHIVVLNGGQGRRRAALIEDGLTLCDVCAPAGNHQQIRFER
Ga0316605_123286002	3300033408	Soil	MTDQSDRMEAKQPRCSICKHPVALVPTPGRRRTALIEDGLTLCDVCAPSGNHQPVRFER
Ga0326726_102891732	3300033433	Peat Soil	MTLRSDRLESKPLVCSVCKHPLSIHPAPGCRRAALIEDGLTLCDVCAPAGNHQPVRFER
Ga0316627_1018269911	3300033482	Soil	MTLPNDRAEAKPLHCSVCKHPLSLRPLPGHRRAALIEDGLTLCDVCAPAGNHQPIRFERS
Ga0299912_100919503	3300033489	Soil	MTDQSDRVDSKQPRCSVCKHPVALVAGQGRRRAALIEDGLTLCDVCAPSGNHQQVRFER
Ga0326731_10951231	3300033502	Peat Soil	MTDQGDRMDAKQTRCSVCKHPVALVAGQGRRRAALIEDGLTLCDVCAPSGNHQPVRFER
Ga0316628_1031606632	3300033513	Soil	MIRGDRMDAKPLRCSICKHPVALHAGQGRRRAALIEDGLTLCDVCAPSGNQQPVRFER
Ga0334821_063161_32_211	3300033798	Soil	MSTEGDRMEAKEVRCSVCKRPVALRAGQGRRLVALVEDGLTLCDVCAPAGNHQPVRFER
Ga0334816_015453_1078_1257	3300033819	Soil	MSTEGDRMEAKEVRCSVCKRPVALRAGQGRRLVALVEDGLTLCDVCAPAGNHQPVRSER
Ga0334818_000191_7059_7217	3300033821	Soil	MDAKETRCSVCKHPVALVAGPGRRRAALIEDGLTLCDVCAPAGNHQPVRFER
Ga0334843_001147_2805_2963	3300033825	Soil	MDAKLVRCSVCKHVVALQGGQGRRRAALIEDGLTLCDVCAPSGNHQPIRFER
Ga0334848_000130_18088_18267	3300033827	Soil	MSIRGDRMDAKTLRCSVCKHVMVLSGGQGRRRAALIEDGLTLCDVCAPSGNHQPVRFER
Ga0334810_110487_268_447	3300033890	Soil	MLIRGDRMDAKPLRCSVCKHVVALHGGQGRRRAALIEDGLTLCDVCAPSGNHQPIRFER
Ga0334811_004069_1_129	3300033891	Soil	MDAKLLRCSVCKHPVALHSGQGRRRAALIEDGLTLCDVCAPAG
Ga0334811_017294_1562_1741	3300033891	Soil	MSIRGDRVEAKPLLCSVCKHPVALHGGEGRRRAALIEDGLTLCDVCAPAGNHQPVRFES
Ga0334811_060512_322_501	3300033891	Soil	MPTEGDRMEAKEVRCSVCKHPLALRAGQGRRLAALIEDGLTLCDVCAPAGNHQPVRFER
Ga0370501_0001035_4201_4425	3300034195	Untreated Peat Soil	MAAPVAPPPARVMTGMLTRGDYADTKPVRCSVCKHPVSFQAGRGHRRAALIEDGLTLCDVCAPSGNHQPVRFEG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F068758

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences