Scaffold Ga0182014_10006979

Overview

Basic Information

• Taxon OID: 3300014491
• Scaffold ID: Ga0182014_10006979
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11969
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F006278	Metagenome / Metatranscriptome	377	Y
F017965	Metagenome / Metatranscriptome	237	Y
F062069	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_1000697910	F006278	GAGG	MFRAEIRWLASGPTLKLEGKLVADWAEQARCLVTTDVLPKGLVVDLTEVSYIDSVGEQLLKWLASVGALFVAGNVYAIAVCDRLGLSPMQRISERRKRRHGNNEEGYSIRHSRPVEAV*
Ga0182014_1000697911	F017965	AGGA	MSEKIGHRDALYLFACHLEWLTERNLAAYQELLAALDDPDGDIRRLAEYLLHRSSPRPERAATGIESW*
Ga0182014_100069795	F062069	N/A	MIGQRNKGSVMTEDGTSIHVRIDDEGYTHITVIQWDENGREIVYREDETFQCSEPQF*
Ga0182014_100069799	F001596	AGGAG	MSRFHSITEAVDARNHASPAEIVACFQDQRNVLSRLAFLITGDQAAAEQAVVHACEMTIQGNSPFRDWLFEWAKAATIASAISHGTEAIRICEAAYKDRRCPHAEHLSQDDAEERAASLDLILAADAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLAANCHAMTWRQNGHAKPVEENHNASHAV*