Scaffold Ga0182014

Basic Information
Taxon OID	3300014491 Open in IMG/M
Scaffold ID	Ga0182014_10000177 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014491 Open in IMG/M

Scaffold ID

Ga0182014_10000177 Open in IMG/M

Source Dataset Name

Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	77828
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	62 (75.61%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

77828

Total Scaffold Genes

82 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

62 (75.61%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Stordalen
Coordinates	Lat. (^o)	68.35	Long. (^o)	19.05	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Stordalen

Coordinates

Lat. (^o)

68.35

Long. (^o)

19.05

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004207	Metagenome	448	Y
F025667	Metagenome / Metatranscriptome	200	Y
F038120	Metagenome / Metatranscriptome	166	Y
F047521	Metagenome / Metatranscriptome	149	Y
F075293	Metagenome / Metatranscriptome	119	Y
F075575	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182014_100001771	F004207	N/A	VTLFEKTPILQALHAPASDTDLLDPGNQLILFDF*
Ga0182014_1000017718	F075575	AGGAGG	MYQRNRLGQMILEHWQKHRPQMVEELQRTYQLDQMIYEAQETTGDLLYELVSVQKMDYQAAWEIAMREWALPASPARPQSSLAGTPTSR*
Ga0182014_1000017721	F075293	AGGAGG	MWNFLFLAFQWHRGKRGFVILSLTFLAFLLYAVANVH*
Ga0182014_1000017726	F038120	GGA	MQAQPIPKTPAKGAMLQAWQQSLSEAHQIAKMVLGRAASTVVAERNSGIYRGVIIGHTRDYIIQQIGKQAAAVIHSKDLFHAPDREFPWPEVGRAFSIHYSRSHAVAREIREKLREHGLIR*
Ga0182014_1000017731	F025667	N/A	LLLMLCSCTRERPSRIVKLAEQAGAGQLSEASTVDMRVWLNGHPQIAIRVDALCAPVRTNAPAAWPQTTEGRLCTAARVSVSKIDAQRHPRPNPDTTGFLPGWK*
Ga0182014_1000017738	F047521	GAGG	MGVIIVPFDYNEESNFSVVPICIGDIDPDGNPIHRAWVEQGVIPVADPLRKIASRVLNDVWRVSEITEHAVHSLSRKHCWDVGDEPSLRVLKRAHWYAEDLRAGGRRARRKTEVELFTAKLETLQDQFDLVSQLEATDTLDRLMKELDRQGLHDVSEMVPMMLRDCTAHEFEVRFGKSRNTLSQRFYRGIRRAARASGITW*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0182014_10000177

Overview

Ecosystem & Geography

Associated Families

Sequences