NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182018_10016245

Scaffold Ga0182018_10016245


Overview

Basic Information
Taxon OID3300014489 Open in IMG/M
Scaffold IDGa0182018_10016245 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5056
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001432Metagenome / Metatranscriptome696Y
F006683Metagenome / Metatranscriptome367Y
F015081Metagenome257Y
F072981Metagenome120Y
F087856Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0182018_100162454F006683GGAGGMNKPHRADVRQVDLKVNGITFESVRLRRSSGANDFDIVIDDPHVGRFALTSAVPNLELQDEDSGWRQVTLDELKKILADDGELAEAAEQPQASGTSERESFNRRVAEGEHIMNAEIALFRAGIPFLQLPFQQNKFSSNLFMVMSVPTAKACLQRAGFQPKFDSETVLFDGCNGQAVQLIQGKYRLPRTKS*
Ga0182018_100162455F015081AGGMNPYSGDKEIGSEDLIQEQRSIARSKNPFERVVGSLCIGASLKEQLVRLPNSAISRLLTDQIWSQLNLLEPESVIVEIATERLVEKREASLICPECGSEFWRADE*
Ga0182018_100162456F001432AGGAGGMSLQKEFIRDGKRRIIGSVTSGFSDESAVVRDDDNQLSGRTSERYDTTRDDHGNLVSINSADPGLLIGRKK*
Ga0182018_100162457F087856N/ALAVTMSKLRRADYTEHLVGKTIKRVHWNNNEQMKCLTLEFTDLTLCSFRFELAVDEEAELSDFASGNPSKRRKLIPLPLVRQPIKPLV*
Ga0182018_100162459F072981GAGGMRIEIEHGAIIADDEEGLWRVLEVSDEELFLLMLPEREDVVHTRHVTWRQFVECGYDLKFP*
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