Scaffold Ga0182000_10551978

Overview

Basic Information

• Taxon OID: 3300014487
• Scaffold ID: Ga0182000_10551978
• Source Dataset Name: Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 547
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Magueyal, Guanajuato
• Coordinates
  • Lat. (^o): 21.195
  • Long. (^o): -100.439

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F021376	Metagenome / Metatranscriptome	219	Y
F033892	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182000_105519781	F033892	N/A	IHCYTTWDTPEQLDAFLERGYTFERMLVDVAGIAAEPTLVMEKVF*
Ga0182000_105519782	F000280	AGAAGG	MANEDERSGLRRLTPARPLLGYRDVGEDVRHSRGSTIRAWVILGGLVLFYLAWTLTVFFIEPGLR*
Ga0182000_105519783	F021376	GGAG	VYLKHLSSLQFLTYIAFFSVVVAALFKFVPGKAPPVRTVPYPDDELGAHDHKTAKYFVAAGCFLV