Scaffold Ga0172380_10424366

Overview

Basic Information

• Taxon OID: 3300014205
• Scaffold ID: Ga0172380_10424366
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 993
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090570	Metagenome / Metatranscriptome	108	N
F103495	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172380_104243661	F103495	GAGG	MDSILQFLIDSGLLYMIISTLLTVGIGFIVGKGVSFKEIQDIISAVDESYKDGYISPDEARKIYEEIEDVIGHDWYIRLFNIIKR*
Ga0172380_104243663	F090570	AGG	MNEFGNAYIEKVWSNSVKSPRPLKVIPYLKDFKVFFSVKGTEIGRITIGVYVDNELDQMLTTNILVKNKSLAIWFWYPYKRKQMGKHVIQFKIGEATDRTVDSVTWKYTSDKYIVEVK*