Scaffold Ga0181528_10000038

Overview

Basic Information

• Taxon OID: 3300014167
• Scaffold ID: Ga0181528_10000038
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 132585
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (66.13%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .1 to .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003713	Metagenome / Metatranscriptome	472	Y
F067178	Metagenome	126	Y
F078103	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181528_1000003848	F003713	GGAGG	MQRAVRILVICALVFLPAVMAGGERFDGNWFTKMTCPPKGKTDGYTWKFFSVVTGNNLRGERGEAGAPGYFLIEGKIKEDGSVKLAASGIVASRQYARGVFAAKGEEYSYNVKAKFTDTEGSGTRDEGLGIVGRPCTFEFWKKQAGSEAGER*
Ga0181528_1000003863	F078103	N/A	MSLAMIAVVVLSLAAGVGLGYAIIFGILDLFDRSRHTIKAPAQVLTTSSGND*
Ga0181528_1000003880	F067178	GGA	MPLAGMVVSEVAITVSIELLARRAHLSLATILVYRSLLALALLALIVRPTRSEWTPRSPRLALLRVVTGGLTFVGWFGAIGLLSGRVTQAVLLLDALILAYVRGSRRSYERRTLLVLSTALILFALEAVREPGTVLNAPRGIAFLLVALASRAATYKVWERAQHADEHLFWLIAPALVGATLGGFALRAASHTALQPLSPAMWAAMLVVAMVGLTGYFYMNTVMSLLGAFYTRVVELWQVPVLWAIHLYTDHAQADLAQGTLGLLVACASAYTYLRHRRGDSNTALND*