Scaffold Ga0181532_10001874

Overview

Basic Information

• Taxon OID: 3300014164
• Scaffold ID: Ga0181532_10001874
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19952
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003010	Metagenome / Metatranscriptome	513	Y
F007478	Metagenome / Metatranscriptome	350	Y
F008095	Metagenome / Metatranscriptome	339	Y
F062918	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_100018741	F062918	AGGAGG	VACRSCGSEHQTQFVAEINIHFSGLRNLDKPGVLVFPKLWVCFDCGFTQFTLPESELDLLTGNIAA*
Ga0181532_1000187410	F007478	GAGG	MIRLPILKDEVTFLEKLLPDLETRPDLGHLAIEIKKRIEKIRQEIRALQENK*
Ga0181532_1000187417	F003010	GGAG	MAKFLKKSLLESVPVLVLLGLLAGAVGGLGVGLIQLRAMSSAASSSTTPPK*
Ga0181532_100018749	F008095	GGCGG	MDKSEDQDRGKGATEQDSQNQGGNTSMQGQLGHRDENAELKNADSDLSG*