Basic Information | |
---|---|
Taxon OID | 3300014164 Open in IMG/M |
Scaffold ID | Ga0181532_10000110 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 79244 |
Total Scaffold Genes | 75 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (64.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 47.1149 | Long. (o) | -88.5476 | Alt. (m) | Depth (m) | .3 to .4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000858 | Metagenome / Metatranscriptome | 858 | Y |
F007333 | Metagenome / Metatranscriptome | 353 | Y |
F013543 | Metagenome / Metatranscriptome | 270 | Y |
F071890 | Metagenome / Metatranscriptome | 121 | Y |
F076790 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181532_1000011013 | F000858 | GGAG | MSGNGYLFAAYAVTWIIHITYLGTIVRRYKRLQGEIEALKKPGVRS* |
Ga0181532_1000011019 | F007333 | AGGAGG | VQEELHHARSLGLSVALGAAMGAALGAVTGHVGVWVAVGIAAYIAISVAGGVCSKRPNDQRRTTND* |
Ga0181532_100001102 | F071890 | GGAGG | MNSANMNNADVSNDSIERLCNSCGKTFSTFLHEMADQNAKVVCPDCRKSADCRPAKATKTVARTRSTKKTV* |
Ga0181532_1000011058 | F013543 | GAG | LSFSTLDRHLKKRHWKRRRKPVSSASGLVPVELAAKKSPTQHEPNCALAVMLPGGRRIEVHPDFDTNTLERLVSALERV* |
Ga0181532_1000011074 | F076790 | N/A | MFRSSVAAFYPLPRCLFYRVGGFHWGRFSIVFMLPPGSSEVKEIVHWMPEILFAAEIAFRGLH* |
⦗Top⦘ |