Scaffold Ga0181532_10000110

Overview

Basic Information

• Taxon OID: 3300014164
• Scaffold ID: Ga0181532_10000110
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79244
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (64.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000858	Metagenome / Metatranscriptome	858	Y
F007333	Metagenome / Metatranscriptome	353	Y
F013543	Metagenome / Metatranscriptome	270	Y
F071890	Metagenome / Metatranscriptome	121	Y
F076790	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_1000011013	F000858	GGAG	MSGNGYLFAAYAVTWIIHITYLGTIVRRYKRLQGEIEALKKPGVRS*
Ga0181532_1000011019	F007333	AGGAGG	VQEELHHARSLGLSVALGAAMGAALGAVTGHVGVWVAVGIAAYIAISVAGGVCSKRPNDQRRTTND*
Ga0181532_100001102	F071890	GGAGG	MNSANMNNADVSNDSIERLCNSCGKTFSTFLHEMADQNAKVVCPDCRKSADCRPAKATKTVARTRSTKKTV*
Ga0181532_1000011058	F013543	GAG	LSFSTLDRHLKKRHWKRRRKPVSSASGLVPVELAAKKSPTQHEPNCALAVMLPGGRRIEVHPDFDTNTLERLVSALERV*
Ga0181532_1000011074	F076790	N/A	MFRSSVAAFYPLPRCLFYRVGGFHWGRFSIVFMLPPGSSEVKEIVHWMPEILFAAEIAFRGLH*