Scaffold Ga0181532_10000032

Overview

Basic Information

• Taxon OID: 3300014164
• Scaffold ID: Ga0181532_10000032
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 140670
• Total Scaffold Genes: 131
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (63.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008311	Metagenome / Metatranscriptome	335	Y
F061336	Metagenome / Metatranscriptome	132	Y
F061997	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_1000003215	F061997	GAG	MYMKKSDHSNQPVRNRWLDVDEVRLVSDLRIMHSKVEELYQMVINLKRRHSESDIHKYADQPVLSEDIAHVDEIYLWFVSLKEDNNKKAM*
Ga0181532_1000003239	F061336	GGA	MFESETEYIVELQPRITQRLDELGFTNSRQASFLAHSLAEIASRSRTLDQQALPLFLSLDASRRRSLAELTVALKNHLDGMQDAITDLRAPLTELIDFLAREESQP*
Ga0181532_1000003277	F008311	GAGG	MSLSELASIATAVSGLAVTASLIYLAIQTRQNVRHTTALIHQGTAARTTTILLELMNADVVAAWIEGNGGTPTPELIRQEQFYYQCRVSMIAMEDYFGQHELGLLSDEQFARGRATFRHLLKEPGLRAYWLIQRDIIATAAPNYCAFIDSLCTEETTSPGSRK*