Scaffold Ga0181532_10000013

Overview

Basic Information

• Taxon OID: 3300014164
• Scaffold ID: Ga0181532_10000013
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 214381
• Total Scaffold Genes: 228
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 180 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .3 to .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003165	Metagenome / Metatranscriptome	504	Y
F010830	Metagenome / Metatranscriptome	298	Y
F062069	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181532_10000013143	F003165	AGGAG	MAKVIEFYVPKNFRMARASQLQHGKVIEFCSRTKKSA*
Ga0181532_1000001315	F003165	AGGAG	MAKMVEFYVPKNFRNQSKWVPQVQGGKVIEFCPQTKKTA*
Ga0181532_10000013215	F062069	AGGAGG	MLEDSTSIRVRIDDQGYTHVTVIQWDEDGQEIVYREDENFQCSEAQL*
Ga0181532_1000001370	F010830	GAG	MLSKLLQIVALTACLTPAWGKATSELSFVRQPNTVSIVGPGTVVSVHLLDLPFIKPHYAVKYKTDGGELIEVCTPGKDVLVLEGMHGMLTYSTHPEKILSFRVVEQKLTK*