NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181530_10004200

Scaffold Ga0181530_10004200


Overview

Basic Information
Taxon OID3300014159 Open in IMG/M
Scaffold IDGa0181530_10004200 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15476
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (55.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070436Metagenome / Metatranscriptome123Y
F079064Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0181530_100042004F070436GAGMHDWHDWMLIAAPLAAVLYFLAFQDQFRELLFWVSTLVN*
Ga0181530_100042006F079064AGGMYHAKCRADWSNETITMRQSEFDEINAALGRAEFALEELRKRADELQLRSTVAKSLEAIAVLNLEATELLQQIVKLSTAVHTGNPAPHLRLVSDAE*

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