Scaffold Ga0181539_1008894

Overview

Basic Information

• Taxon OID: 3300014151
• Scaffold ID: Ga0181539_1008894
• Source Dataset Name: Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7058
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 47.1149
  • Long. (^o): -88.5476
  • Depth (m): .6 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F020738	Metagenome / Metatranscriptome	222	Y
F045709	Metagenome / Metatranscriptome	152	Y
F070426	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181539_10088941	F020738	N/A	AAVISIAFGFLGRRRPKDRIKYILWSFFLFLVVGVGIAWAMYPFSR*
Ga0181539_10088946	F070426	GGAGG	MILELMVVTEASALSASWIKQSRMRRQQILLGGSTPEIKLPFLDQHLRQQTPNATRFQTFAAQKLAGVCRSAVHTRAFELLVLKLIQSASRRYRRESEISKVKVIL*
Ga0181539_10088947	F045709	AGG	VTLTPSQKGSFLAGVGLWVLIWASLWKADDIAGAMRIQRWFNSTRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLLLPCLERLLRQRSTATTVLQ*
Ga0181539_10088948	F014894	AGGA	MSIGIPGISVYFEHTQIKPFIKDHSKKARELFNERVVPTVLRGTCQALEVVANNTADAHDYLIAKLKTKQSA*