NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134350_1000016

Scaffold Ga0134350_1000016


Overview

Basic Information
Taxon OID3300014137 Open in IMG/M
Scaffold IDGa0134350_1000016 Open in IMG/M
Source Dataset NameHuman oral microbial communities of schizophrenia patients from Maryland, USA - ES_208
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe George Washington University (GWU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)80298
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (82.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Maryland
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080166Metagenome115N
F081455Metagenome114N
F092229Metagenome107N
F095629Metagenome105N
F099453Metagenome103N
F105379Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0134350_100001615F081455AGGAGMEITNTENKNLFQQLSSLGFDVNESLLELEKDYSPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPETEEVKTELVSTPDNGEAKVNVVFPKNEHILGNYVDYESFNKIKESNTETVVRAIHLLNYKMADQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVINGTTKYYADIYPDLNKIDIDHHLISSARK*
Ga0134350_100001616F080166N/AVNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCNIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGDRLDLMPFVLIDDHNGTLIEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMK*
Ga0134350_100001618F099453AGGAGGMNRFDIIELAQETLIFVYNTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNEVYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYTFMVCENRIYINSANLNDLGERLLNDKQYTVEYLEYGDSKLVIKITQGA*
Ga0134350_100001638F092229AGGAGMNKEYRFKHIPEVVLRNVKFIRENNIDIGTGDDVLECMMDINPVLRQRIYDDYDLAKDVAERRFNSTIEDLDLTTILQKCTTRPYIAILNNIYFRYFNSKLIEDMFKLGESIKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLSDPQVNAVKSAEFTYDLLVAARSENFNPEMVRDIFLKYGLKTNSSRNLYNRMDNNLSLFYYLEDYLEEYVNTGKFTYGSQEYHTIKEFKYLPLMNVLTQLTRSNPSGYILNYKLELVKG*
Ga0134350_100001666F105379AGGAGGMVIHFPLSQSDIESLLSISKLLKCDKILYDRNYVNPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLEPSKENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDDYNELMAGSASTGAFRINVGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY*
Ga0134350_100001672F095629N/AMEVFKMRELIICACLLGCFGVANADAPVEQPKEVKVVHNDDSVALHKKVYKLEQRIERLEKLLAEKEGK*

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