Scaffold Ga0181454_10589

Overview

Basic Information

• Taxon OID: 3300014115
• Scaffold ID: Ga0181454_10589
• Source Dataset Name: Clean room spacecraft assembly facility microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate B, treated with PMA SPAdes reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1113
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Source Dataset Sampling Location

• Location Name: NASA Jet Propulsion Laboratory, Pasadena, California, USA
• Coordinates
  • Lat. (^o): 34.1991
  • Long. (^o): -118.1715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071964	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181454_105892	F071964	N/A	SIALERSLSTSPSDVLGDVRALLAAPASSLEELLADRIAGEAVRIVEDLIREAFVVTEFDPDEVYGFMNSEEAAEFLGLPYSSFREIAPSLPRHAITPARFGYLRRELLAWGKDR*