3300014115: Clean room spacecraft assembly facility microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate B, treated with PMA SPAdes reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300014115
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095512 | Gp0056972 | Ga0181454
• Sample Name: Clean room spacecraft assembly facility microbial communities from NASA Jet Propulsion Laboratory, California, USA - Floor swab, replicate B, treated with PMA SPAdes reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2173529
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: NASA Jet Propulsion Laboratory, Pasadena, California, USA
• Coordinates
  • Lat. (^o): 34.1991
  • Long. (^o): -118.1715
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071964	Metagenome	121	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0181454_10589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1113

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0181454_10589	Ga0181454_105892	F071964	SIALERSLSTSPSDVLGDVRALLAAPASSLEELLADRIAGEAVRIVEDLIREAFVVTEFDPDEVYGFMNSEEAAEFLGLPYSSFREIAPSLPRHAITPARFGYLRRELLAWGKDR*