Scaffold Ga0134347_1027084

Overview

Basic Information

• Taxon OID: 3300014109
• Scaffold ID: Ga0134347_1027084
• Source Dataset Name: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_110
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The George Washington University (GWU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 999
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Source Dataset Sampling Location

• Location Name: USA: Maryland
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134347_10270841	F033081	GAGG	MCPPDIAVVHRPQKGAMAWLFKKGMPQDPKPVFVWPRLVTAIKDVGYFSRRELSVLAVGLIIVTIVTIKTLLLVPELNQSVVGLLTHGLEAFLPAGWATGAAWVVGMAGVFLMGNFTNYTPSQRFLHKTKATRCEAYNTLLLLALWEEQAFRSGSEKWSWRERVRASMCFGLAHIVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAV