3300014109: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_110

Overview

Basic Information

• IMG/M Taxon OID: 3300014109
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121296 | Gp0151519 | Ga0134347
• Sample Name: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_110
• Sequencing Status: Permanent Draft
• Sequencing Center: The George Washington University (GWU)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 141754154
• Sequencing Scaffolds: 23
• Novel Protein Genes: 24
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Maryland
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F046431	Metagenome	151	Y
F047508	Metagenome	149	N
F051988	Metagenome / Metatranscriptome	143	Y
F053092	Metagenome	141	N
F054110	Metagenome	140	N
F071328	Metagenome	122	N
F080164	Metagenome	115	N
F085820	Metagenome	111	N
F094007	Metagenome	106	N
F103430	Metagenome	101	N
F103431	Metagenome	101	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N
F103436	Metagenome	101	Y
F105376	Metagenome	100	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134347_1000001	Not Available	164314
Ga0134347_1000724	All Organisms → cellular organisms → Bacteria	12103
Ga0134347_1000961	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	10313
Ga0134347_1001085	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella → Alloprevotella sp. oral taxon 473	9499
Ga0134347_1001699	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7326
Ga0134347_1001855	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	6912
Ga0134347_1002743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	5415
Ga0134347_1003079	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4991
Ga0134347_1004245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4049
Ga0134347_1004381	Not Available	3984
Ga0134347_1005369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3492
Ga0134347_1006661	Not Available	2988
Ga0134347_1008315	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2536
Ga0134347_1011457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1994
Ga0134347_1014424	All Organisms → cellular organisms → Bacteria	1667
Ga0134347_1020503	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1247
Ga0134347_1026981	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1002
Ga0134347_1027084	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	999
Ga0134347_1031122	Not Available	897
Ga0134347_1036009	Not Available	803
Ga0134347_1060906	Not Available	542
Ga0134347_1062103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	533
Ga0134347_1065673	Not Available	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134347_1000001	Ga0134347_100000158	F105378	MKVSVYVDKLKKWVPISSDEILDRNKNLSDVKDKDAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTQEDGTLISPVFVDVQCVEYTGGDLGEVSVSYTSELINIYNTGSFTGAFQCMIVYPLGSVNR*
Ga0134347_1000724	Ga0134347_10007249	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0134347_1000961	Ga0134347_10009611	F085820	MYPRDLKVFAAGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLIAPPNPDHLKQRIVLRLADGTEIEKELSEKGKK*
Ga0134347_1001085	Ga0134347_10010853	F080164	MRPTSFVLSLLLGVIGLAPCAAQQVTLRERASAFPLITEKDESEIDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKSMHVYGVQKDGSRQAVDKQVTLHLPGFEKAEKPILYKGQEGRLVLCEYYESHRGDLFLDVANAHPEIFGELRPVVDFHFSVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPDRL*
Ga0134347_1001085	Ga0134347_10010854	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDAEPARAAWLISTDSLIHAAKVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSLRVVAVGDTIYRQKESDAQFNADLDALFHESIGIAPRLFGVRELSVLGIDRKGKPRDLGNYSCPLLQGKRQNVNYRTREGVFHEHYEAASVDTFSVKDDWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLR*
Ga0134347_1001699	Ga0134347_10016992	F043235	VDEFGTQLTDALFDRPDRSKRELHQGAVNGDDIVQLRYMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYTEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0134347_1001855	Ga0134347_10018552	F053092	MQSDQGLILCLTHAVLILGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHIPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHKWYAVV*
Ga0134347_1002743	Ga0134347_10027438	F103431	MIDFDALIVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFGEDIADCHAEDDNDKDAESQKEGFHVCIPEG*
Ga0134347_1003079	Ga0134347_10030793	F045567	MVTEDVVHTSTHRVEDTLLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSRERGCVVERVVR*
Ga0134347_1004245	Ga0134347_10042455	F103436	MITTSKDGWCGKSDAEILNSLKDWVSRCDVKYVKSDALKKIDSAFALWANGQYVSALRLLDENEVFLKKSDWPYYALGIEILRVRKHEFLNE*
Ga0134347_1004381	Ga0134347_10043815	F105376	MGKIMNEKPEVSAKEFGALEADVRHIKESVDRHTTTLERIENIARANVTQSQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTQVRRK*
Ga0134347_1005369	Ga0134347_10053694	F103436	MIVASKKRLCDKSEDEIFDSLRDWVLACDLKYSKEDALGKIDRASALWGAADYVTAVHLLDENEPYFKKSDWPYYALGLEILMARKREFFDE*
Ga0134347_1006661	Ga0134347_10066614	F103430	VEQITIKAFIGSNNETKELEIDKIASTLSKNHEAFTLQYPVFGYWKGETEQTAILYLSDERSKVLNTLNELKEVLDQEAIAYQLQDKLNLI*
Ga0134347_1008315	Ga0134347_10083152	F033081	MAWLFNRVMPTDSRPVFVWPKLVAAIEDTGNFGKRWLTAIATGLIIVTIATIKALLMIPGLDSSVVGLLTSIFETFLPARWATGAAWIVGATGVFLVGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWRERVRASVCFGLLHVTNIWYSFAAGIALSVTGFGFLMVYLWYYRKYRSQIIATAAAATVHALYNAIAISLIAAVVSCEPLSKSLLVMFAP*
Ga0134347_1011457	Ga0134347_10114573	F054110	VLDVNYQPAIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLMFPHKYKNGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD*
Ga0134347_1014424	Ga0134347_10144242	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAICLRYSSQLLLKKRRAIRRLGVEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINLYFSKHDQSSIYIIQRIEF
Ga0134347_1020503	Ga0134347_10205032	F033081	MHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATVTAWTVGVVGVFLMGNFTNYTPSQKLIHRIKATRCEVYNTILLLALLEEQAFRSGSERWNWRERVRASVCFGLLHIANIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0134347_1026981	Ga0134347_10269811	F094007	MKSKTVEVLELARPNRADVIDVVDSDGNVVSLDYLGEDFVPDANSYSDKDFTKRNRIIVEMCDLFGGTRRRAGFAEYYRGRGDYDRARRIERNRGSDISEVGRLAINACEACPLKLDCELYGKLGGAVLNKVIDYKSIRTATSLTKAGKKRPGWNKGCIDNDA*
Ga0134347_1027084	Ga0134347_10270841	F033081	MCPPDIAVVHRPQKGAMAWLFKKGMPQDPKPVFVWPRLVTAIKDVGYFSRRELSVLAVGLIIVTIVTIKTLLLVPELNQSVVGLLTHGLEAFLPAGWATGAAWVVGMAGVFLMGNFTNYTPSQRFLHKTKATRCEAYNTLLLLALWEEQAFRSGSEKWSWRERVRASMCFGLAHIVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAV
Ga0134347_1031122	Ga0134347_10311222	F047508	VKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0134347_1036009	Ga0134347_10360091	F051988	DMATFLFTKLRELYTKTINYKLVSTLEKGYAGNVMDDLDLSNAPASLASKFMDYRSRVDLFDAYLINVESALATKAVKGVTTTAYIAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIQEKAGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF*
Ga0134347_1060906	Ga0134347_10609061	F032313	KPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGINVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEEK*
Ga0134347_1062103	Ga0134347_10621031	F046431	LIIMLTYIQTLVFAVESELTLIPNPETNNIHLKWTGPQNSSYKVYQKKPGSSNFETIGLTDFNNVDEEVKVLNIYPTIEGLPMVNVTYLDGHTETIPKSGLLKVWMEGRNSKRRWKYN*
Ga0134347_1065673	Ga0134347_10656731	F103430	MKLITIKAFIGSNNKTKKLEVDKIISTVSINHEAFTLDYPVIGCWRGEVEETAVLYLSDERSKVLNTLNELKEVLGQEAIAYQIENDLQLI*