NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134347_1026981

Scaffold Ga0134347_1026981


Overview

Basic Information
Taxon OID3300014109 Open in IMG/M
Scaffold IDGa0134347_1026981 Open in IMG/M
Source Dataset NameHuman oral microbial communities of schizophrenia patients from Maryland, USA - ES_110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe George Washington University (GWU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1002
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Maryland
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094007Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0134347_10269811F094007N/AMKSKTVEVLELARPNRADVIDVVDSDGNVVSLDYLGEDFVPDANSYSDKDFTKRNRIIVEMCDLFGGTRRRAGFAEYYRGRGDYDRARRIERNRGSDISEVGRLAINACEACPLKLDCELYGKLGGAVLNKVIDYKSIRTATSLTKAGKKRPGWNKGCIDNDA*

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