Scaffold Ga0134359_1000157

Overview

Basic Information

• Taxon OID: 3300014108
• Scaffold ID: Ga0134359_1000157
• Source Dataset Name: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The George Washington University (GWU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12873
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Source Dataset Sampling Location

• Location Name: USA: Maryland
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F051214	Metagenome	144	N
F081456	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134359_100015716	F018385	GGAG	MAEYVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTIYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEAK*
Ga0134359_100015718	F051214	AGGAG	VPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPVYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0134359_10001575	F081456	AGGAG	MFEEPPIYYILISLIFLIVFGAISFATWLVWLTSIAFFAKLVVTAIGFLLCAFTVILYTISAD*