Scaffold Ga0134338_100001

Overview

Basic Information

• Taxon OID: 3300014105
• Scaffold ID: Ga0134338_100001
• Source Dataset Name: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_017
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The George Washington University (GWU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40767
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (86.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Source Dataset Sampling Location

• Location Name: USA: Maryland
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F051214	Metagenome	144	N
F071329	Metagenome	122	N
F081456	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134338_10000110	F027205	AGGA	VASRLIVSADDILKAVKESEEFERKALKEAQKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELANEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0134338_10000115	F051214	AGGAG	MPGKIVPYETHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYVYNNREYQIACEFLRQIMHDKIDLNKEWLA*
Ga0134338_10000116	F071329	AGGA	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDATVKAVEEARDHIEIED*
Ga0134338_10000118	F018385	GGAG	MADLINSWLPYQELSIEKDRDPVTDDEIIYGSNVKHFTLTVYSPEGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFSHDGMNELVFMPGSRRRIVSQLSLDNSGKKEVD
Ga0134338_10000129	F081456	AGGAG	MFEEPPIYYILISLIFLIVFGAISFATWMVWLTYISFFAKLVVTAIGFLLCAMTVILYTISAE*