3300014105: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_017

Overview

Basic Information

• IMG/M Taxon OID: 3300014105
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121296 | Gp0151510 | Ga0134338
• Sample Name: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_017
• Sequencing Status: Permanent Draft
• Sequencing Center: The George Washington University (GWU)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18373844
• Sequencing Scaffolds: 1
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Maryland
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F051214	Metagenome	144	N
F071329	Metagenome	122	N
F081456	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134338_100001	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	40767

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134338_100001	Ga0134338_10000110	F027205	VASRLIVSADDILKAVKESEEFERKALKEAQKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELANEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0134338_100001	Ga0134338_10000115	F051214	MPGKIVPYETHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYVYNNREYQIACEFLRQIMHDKIDLNKEWLA*
Ga0134338_100001	Ga0134338_10000116	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDATVKAVEEARDHIEIED*
Ga0134338_100001	Ga0134338_10000118	F018385	MADLINSWLPYQELSIEKDRDPVTDDEIIYGSNVKHFTLTVYSPEGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFSHDGMNELVFMPGSRRRIVSQLSLDNSGKKEVD
Ga0134338_100001	Ga0134338_10000129	F081456	MFEEPPIYYILISLIFLIVFGAISFATWMVWLTYISFFAKLVVTAIGFLLCAMTVILYTISAE*