Scaffold Ga0120366_100399

Overview

Basic Information

• Taxon OID: 3300014083
• Scaffold ID: Ga0120366_100399
• Source Dataset Name: Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1773
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Freie University Berlin
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1222
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Viral Communites From Wild Urban Brown Rats In Berlin, Germany

Source Dataset Sampling Location

• Location Name: Germany: Berlin
• Coordinates
  • Lat. (^o): 52.529611
  • Long. (^o): 13.401343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057003	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120366_1003991	F057003	N/A	MPNFIDLSNLTYCGAEAQEIFSKDIYDIDLRQYGITFMDGVKGKVKLYNGEIGDAWQVYTCPFTPAGAASLAESFIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGDWYFGKLRQKMAKEYQEIFWQGDKARTASTKTYLKVTDGIEKKMSALPSGNKYTVSAFTVDNIIEQVEAIILKGIDVANAAEVDTEGYKVFMNHADVRVLEIALGKLCCGNSMNDRFANYGRENGRIFVMGYEIVPSMIGKNKVVFGPARNLVLGYDTFDSHIEYKLIDMRETTGDNMFRVLAISNIAVGVIMPELFVYGS*