Basic Information | |
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Taxon OID | 3300014083 Open in IMG/M |
Scaffold ID | Ga0120366_100125 Open in IMG/M |
Source Dataset Name | Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1773 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Freie University Berlin |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2021 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Viral Communites From Wild Urban Brown Rats In Berlin, Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany: Berlin | |||||||
Coordinates | Lat. (o) | 52.529611 | Long. (o) | 13.401343 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F048027 | Metagenome / Metatranscriptome | 148 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0120366_1001252 | F048027 | AGGA | MEKSSTKKTLDLRVRQIAKNNSGKGIGMPNWFTLPQYKEKRLLHIDVCKKLTELSEANDNYPITYLVYFAVGKNAHRLPTFLGGYEKIDEKKANTIFSWLRLFANHNDNLSLFRNPNLAHALCRFYDKYSTRTKDFKDALSKYEKNPKVKNFDMVAKGLGIAKEKKADVEVEESVEMAAVMA* |
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