Scaffold Ga0119956_1016375

Overview

Basic Information

• Taxon OID: 3300014053
• Scaffold ID: Ga0119956_1016375
• Source Dataset Name: Contaminated water microbial communities from Hexachlorocyclohexane (HCH) contaminated sediment in Lucknow, India - Pond Sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Delhi
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 551
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Sediment → Contaminated Water → Contaminated Water Microbial Communities From Pond Sediment In Lucknow, India

Source Dataset Sampling Location

• Location Name: India: Chinhat, Lucknow
• Coordinates
  • Lat. (^o): 26.5389
  • Long. (^o): 81.2022
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008391	Metagenome / Metatranscriptome	334	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119956_10163752	F008391	N/A	WCGCLRRVSLFLTFRDSPDKPFSRWKGKLINDPIATIVRDGQVVGVWEWNAVKDDIDLILFESTPKPVEKAIRKRATALAEFIRHDLGQQPRLHGLDFGPHQMTCIHDLKAFWGRGAQVDIHAV*